.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2480_40x430_2005.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 399 patterns found. (out of a total of 430 sites) . 44 sites without polymorphism (10.23%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 38Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 1 sec) [ -24093.8919] [Alpha ][ 0.744037] . ( 2 sec) [ -24093.8919] [Topology ] . ( 5 sec) [ -23933.0303] [Topology ] . ( 8 sec) [ -23905.5947] [Topology ] . ( 11 sec) [ -23897.0873] [Topology ] . ( 14 sec) [ -23894.6999] [Topology ] . ( 18 sec) [ -23894.1137] [Topology ] . ( 21 sec) [ -23894.4239] [Topology ] . Moving backward . ( 22 sec) [ -23888.7339] [Topology ] . ( 25 sec) [ -23885.8511] [Topology ] . ( 28 sec) [ -23883.4821] [Topology ] . ( 32 sec) [ -23875.2197] [Alpha ][ 0.893113] . ( 32 sec) [ -23875.2197] [Topology ] . ( 35 sec) [ -23872.7801] [Topology ] . ( 39 sec) [ -23871.6161] [Topology ] . ( 42 sec) [ -23871.4433] [Topology ] . ( 45 sec) [ -23871.3851] [Topology ] . ( 49 sec) [ -23871.3595] [Topology ] . ( 52 sec) [ -23871.3470] [Topology ] . ( 55 sec) [ -23871.3406] [Topology ] . Checking for NNIs, optimizing five branches... . ( 83 sec) [ -23871.3012] [Alpha ][ 0.906587] . ( 83 sec) [ -23871.3012] [Topology ] . ( 86 sec) [ -23871.2910] [Topology ] . ( 90 sec) [ -23871.2860] [Topology ] . ( 93 sec) [ -23871.2835] [Topology ] . ( 96 sec) [ -23871.2821] [Topology ] . ( 100 sec) [ -23871.2814] [Topology ] . Checking for NNIs, optimizing five branches... . ( 127 sec) [ -23871.2804] [Alpha ][ 0.908766] . ( 127 sec) [ -23871.2804] [Topology ] . ( 131 sec) [ -23871.2797] [Topology ] . Checking for NNIs, optimizing five branches... . ( 158 sec) [ -23871.2797] [Alpha ][ 0.908766] . ( 158 sec) [ -23871.2797] [Topology ] . ( 162 sec) [ -23871.2794] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -23871.279362. . Printing the most likely tree in file 'proteic_M2480_40x430_2005.phy_phyml_tree.txt'... . Time used 0h3m36s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 213.81user 0.00system 3:36.54elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps