.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2512_14x717_2006.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 703 patterns found. (out of a total of 717 sites) . 39 sites without polymorphism (5.44%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 21Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 1 sec) [ -20898.1075] [Alpha ][ 1.719622] . ( 1 sec) [ -20898.1075] [Topology ] . ( 3 sec) [ -20323.7506] [Topology ] . ( 4 sec) [ -20209.4899] [Topology ] . ( 6 sec) [ -20190.1580] [Topology ] . ( 8 sec) [ -20183.4133] [Topology ] . ( 9 sec) [ -20179.6054] [Topology ] . ( 11 sec) [ -20178.2734] [Topology ] . ( 13 sec) [ -20177.5990] [Topology ] . ( 14 sec) [ -20177.2069] [Topology ] . ( 16 sec) [ -20176.9503] [Topology ] . Checking for NNIs, optimizing five branches... . ( 56 sec) [ -20111.7538] [Topology ] . ( 56 sec) [ -20108.0232] [Alpha ][ 1.456524] . ( 57 sec) [ -20108.0232] [Topology ] . ( 59 sec) [ -20106.2903] [Topology ] . ( 61 sec) [ -20105.8153] [Topology ] . ( 62 sec) [ -20105.6133] [Topology ] . ( 64 sec) [ -20105.5047] [Topology ] . ( 66 sec) [ -20105.4368] [Topology ] . ( 69 sec) [ -20105.3898] [Topology ] . Checking for NNIs, optimizing five branches... . ( 97 sec) [ -20104.4147] [Topology ] . ( 97 sec) [ -20103.4762] [Alpha ][ 1.346223] . ( 97 sec) [ -20103.4762] [Topology ] . ( 100 sec) [ -20103.0390] [Topology ] . ( 102 sec) [ -20102.9113] [Topology ] . ( 105 sec) [ -20102.8527] [Topology ] . ( 107 sec) [ -20102.8185] [Topology ] . ( 109 sec) [ -20102.7957] [Topology ] . ( 112 sec) [ -20102.7794] [Topology ] . Checking for NNIs, optimizing five branches... . ( 142 sec) [ -20102.5334] [Alpha ][ 1.294348] . ( 143 sec) [ -20102.5334] [Topology ] . ( 144 sec) [ -20102.4148] [Topology ] . ( 146 sec) [ -20102.3768] [Topology ] . ( 148 sec) [ -20102.3577] [Topology ] . ( 150 sec) [ -20102.3458] [Topology ] . ( 152 sec) [ -20102.3377] [Topology ] . ( 154 sec) [ -20102.3318] [Topology ] . Checking for NNIs, optimizing five branches... . ( 184 sec) [ -20102.2632] [Alpha ][ 1.268600] . ( 184 sec) [ -20102.2632] [Topology ] . ( 186 sec) [ -20102.2296] [Topology ] . ( 188 sec) [ -20102.2181] [Topology ] . ( 189 sec) [ -20102.2122] [Topology ] . ( 192 sec) [ -20102.2084] [Topology ] . ( 195 sec) [ -20102.2060] [Topology ] . ( 197 sec) [ -20102.2042] [Topology ] . Checking for NNIs, optimizing five branches... . ( 227 sec) [ -20102.1834] [Alpha ][ 1.254001] . ( 227 sec) [ -20102.1834] [Topology ] . ( 229 sec) [ -20102.1724] [Topology ] . ( 231 sec) [ -20102.1689] [Topology ] . ( 233 sec) [ -20102.1673] [Topology ] . ( 234 sec) [ -20102.1665] [Topology ] . Checking for NNIs, optimizing five branches... . ( 262 sec) [ -20102.1615] [Alpha ][ 1.246927] . ( 262 sec) [ -20102.1615] [Topology ] . ( 264 sec) [ -20102.1586] [Topology ] . ( 266 sec) [ -20102.1579] [Topology ] . Checking for NNIs, optimizing five branches... . ( 294 sec) [ -20102.1571] [Alpha ][ 1.243876] . ( 294 sec) [ -20102.1571] [Topology ] . ( 296 sec) [ -20102.1565] [Topology ] . Checking for NNIs, optimizing five branches... . ( 322 sec) [ -20102.1551] [Alpha ][ 1.240063] . ( 323 sec) [ -20102.1551] [Topology ] . ( 325 sec) [ -20102.1540] [Topology ] . ( 326 sec) [ -20102.1546] [Topology ] . Checking for NNIs, optimizing five branches... . ( 353 sec) [ -20102.1541] [Alpha ][ 1.237895] . ( 353 sec) [ -20102.1541] [Topology ] . ( 355 sec) [ -20102.1543] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -20102.154256. . Printing the most likely tree in file 'proteic_M2512_14x717_2006.phy_phyml_tree.txt'... . Time used 0h6m51s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 388.27user 0.00system 6:50.79elapsed 94%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps