.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2558_27x1060_2005.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 746 patterns found. (out of a total of 1060 sites) . 362 sites without polymorphism (34.15%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 47Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 1 sec) [ -37472.1429] [Alpha ][ 0.689004] . ( 2 sec) [ -37472.1429] [Topology ] . ( 6 sec) [ -37275.6590] [Topology ] . ( 10 sec) [ -37238.0253] [Topology ] . ( 14 sec) [ -37217.8995] [Topology ] . ( 18 sec) [ -37208.1468] [Topology ] . ( 22 sec) [ -37203.9396] [Topology ] . ( 26 sec) [ -37202.1545] [Topology ] . ( 30 sec) [ -37201.0720] [Topology ] . ( 34 sec) [ -37200.4740] [Topology ] . ( 38 sec) [ -37200.0690] [Topology ] . Checking for NNIs, optimizing five branches... . ( 89 sec) [ -37199.5484] [Topology ] . ( 89 sec) [ -37194.7954] [Alpha ][ 0.615575] . ( 90 sec) [ -37194.7954] [Topology ] . ( 93 sec) [ -37193.2255] [Topology ] . ( 97 sec) [ -37192.6086] [Topology ] . ( 101 sec) [ -37192.3151] [Topology ] . ( 105 sec) [ -37192.1739] [Topology ] . ( 108 sec) [ -37192.1057] [Topology ] . ( 112 sec) [ -37192.0724] [Topology ] . Checking for NNIs, optimizing five branches... . ( 160 sec) [ -37190.4841] [Topology ] . ( 161 sec) [ -37189.3523] [Alpha ][ 0.582519] . ( 161 sec) [ -37189.3523] [Topology ] . ( 165 sec) [ -37188.8012] [Topology ] . ( 169 sec) [ -37188.5915] [Topology ] . ( 172 sec) [ -37188.4981] [Topology ] . ( 176 sec) [ -37188.4556] [Topology ] . ( 180 sec) [ -37188.4359] [Topology ] . ( 184 sec) [ -37188.4268] [Topology ] . Checking for NNIs, optimizing five branches... . ( 229 sec) [ -37188.2745] [Topology ] . ( 230 sec) [ -37187.8143] [Alpha ][ 0.562381] . ( 231 sec) [ -37187.8143] [Topology ] . ( 234 sec) [ -37187.5885] [Topology ] . ( 238 sec) [ -37187.5065] [Topology ] . ( 242 sec) [ -37187.4714] [Topology ] . ( 246 sec) [ -37187.4558] [Topology ] . ( 250 sec) [ -37187.4488] [Topology ] . ( 253 sec) [ -37187.4456] [Topology ] . Checking for NNIs, optimizing five branches... . ( 297 sec) [ -37186.8870] [Topology ] . ( 297 sec) [ -37186.6924] [Alpha ][ 0.549816] . ( 298 sec) [ -37186.6924] [Topology ] . ( 302 sec) [ -37186.5943] [Topology ] . ( 305 sec) [ -37186.5621] [Topology ] . ( 309 sec) [ -37186.5489] [Topology ] . ( 313 sec) [ -37186.5432] [Topology ] . ( 317 sec) [ -37186.5406] [Topology ] . ( 321 sec) [ -37186.5394] [Topology ] . Checking for NNIs, optimizing five branches... . ( 363 sec) [ -37186.4530] [Alpha ][ 0.541753] . ( 364 sec) [ -37186.4530] [Topology ] . ( 367 sec) [ -37186.4112] [Topology ] . ( 371 sec) [ -37186.3977] [Topology ] . ( 375 sec) [ -37186.3922] [Topology ] . ( 379 sec) [ -37186.3898] [Topology ] . ( 383 sec) [ -37186.3887] [Topology ] . ( 386 sec) [ -37186.3881] [Topology ] . Checking for NNIs, optimizing five branches... . ( 429 sec) [ -37186.3475] [Alpha ][ 0.535906] . ( 429 sec) [ -37186.3475] [Topology ] . ( 433 sec) [ -37186.3251] [Topology ] . ( 437 sec) [ -37186.3179] [Topology ] . ( 441 sec) [ -37186.3151] [Topology ] . ( 445 sec) [ -37186.3138] [Topology ] . ( 448 sec) [ -37186.3132] [Topology ] . Checking for NNIs, optimizing five branches... . ( 491 sec) [ -37186.2960] [Alpha ][ 0.532112] . ( 491 sec) [ -37186.2960] [Topology ] . ( 495 sec) [ -37186.2855] [Topology ] . ( 499 sec) [ -37186.2821] [Topology ] . ( 503 sec) [ -37186.2808] [Topology ] . ( 507 sec) [ -37186.2802] [Topology ] . Checking for NNIs, optimizing five branches... . ( 549 sec) [ -37186.2733] [Alpha ][ 0.529697] . ( 550 sec) [ -37186.2733] [Topology ] . ( 553 sec) [ -37186.2682] [Topology ] . ( 557 sec) [ -37186.2664] [Topology ] . ( 561 sec) [ -37186.2657] [Topology ] . Checking for NNIs, optimizing five branches... . ( 604 sec) [ -37186.2628] [Alpha ][ 0.528126] . ( 604 sec) [ -37186.2628] [Topology ] . ( 608 sec) [ -37186.2601] [Topology ] . ( 612 sec) [ -37186.2591] [Topology ] . Checking for NNIs, optimizing five branches... . ( 654 sec) [ -37186.2582] [Alpha ][ 0.527204] . ( 655 sec) [ -37186.2582] [Topology ] . ( 658 sec) [ -37186.2565] [Topology ] . ( 662 sec) [ -37186.2559] [Topology ] . Checking for NNIs, optimizing five branches... . ( 713 sec) [ -37186.2554] [Alpha ][ 0.526493] . ( 713 sec) [ -37186.2554] [Topology ] . ( 717 sec) [ -37186.2544] [Topology ] . ( 721 sec) [ -37186.2540] [Topology ] . Checking for NNIs, optimizing five branches... . ( 765 sec) [ -37186.2537] [Alpha ][ 0.525939] . ( 765 sec) [ -37186.2537] [Topology ] . ( 770 sec) [ -37186.2530] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -37186.253019. . Printing the most likely tree in file 'proteic_M2558_27x1060_2005.phy_phyml_tree.txt'... . Time used 0h14m21s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 841.95user 0.00system 14:21.13elapsed 97%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps