.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2636_20x1275_2006.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 775 patterns found. (out of a total of 1275 sites) . 495 sites without polymorphism (38.82%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 35Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 2 sec) [ -19286.6097] [Alpha ][ 0.500960] . ( 2 sec) [ -19286.6097] [Topology ] . ( 4 sec) [ -19142.1897] [Topology ] . ( 7 sec) [ -19106.5853] [Topology ] . ( 10 sec) [ -19091.7092] [Topology ] . ( 13 sec) [ -19073.4036] [Topology ] . ( 16 sec) [ -19070.3500] [Topology ] . ( 19 sec) [ -19069.3404] [Topology ] . ( 22 sec) [ -19068.8612] [Topology ] . ( 25 sec) [ -19068.6158] [Topology ] . ( 27 sec) [ -19068.4866] [Topology ] . Checking for NNIs, optimizing five branches... . ( 56 sec) [ -19066.8279] [Alpha ][ 0.460393] . ( 56 sec) [ -19066.8279] [Topology ] . ( 59 sec) [ -19066.7881] [Topology ] . ( 62 sec) [ -19066.7777] [Topology ] . ( 65 sec) [ -19066.7723] [Topology ] . ( 68 sec) [ -19066.7693] [Topology ] . ( 71 sec) [ -19066.7676] [Topology ] . ( 74 sec) [ -19066.7666] [Topology ] . Checking for NNIs, optimizing five branches... . ( 99 sec) [ -19066.7666] [Alpha ][ 0.460393] . ( 100 sec) [ -19066.7666] [Topology ] . ( 103 sec) [ -19066.7661] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -19066.766054. . Printing the most likely tree in file 'proteic_M2636_20x1275_2006.phy_phyml_tree.txt'... . Time used 0h2m35s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 152.50user 0.00system 2:34.34elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps