.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2637_19x380_2006.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 73 patterns found. (out of a total of 380 sites) . 334 sites without polymorphism (87.89%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 4Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 0 sec) [ -1616.6479] [Alpha ][ 0.500960] . ( 0 sec) [ -1616.6479] [Topology ] . ( 1 sec) [ -1613.6198] [Topology ] . ( 1 sec) [ -1613.1692] [Topology ] . ( 1 sec) [ -1613.0031] [Topology ] . ( 2 sec) [ -1612.8750] [Topology ] . ( 2 sec) [ -1612.7126] [Topology ] . ( 3 sec) [ -1612.4940] [Topology ] . Checking for NNIs, optimizing five branches... . ( 6 sec) [ -1609.1034] [Alpha ][ 0.250961] . ( 6 sec) [ -1609.1034] [Topology ] . ( 6 sec) [ -1608.9583] [Topology ] . ( 6 sec) [ -1608.9268] [Topology ] . ( 7 sec) [ -1608.9202] [Topology ] . ( 7 sec) [ -1608.9188] [Topology ] . ( 7 sec) [ -1608.9185] [Topology ] . Checking for NNIs, optimizing five branches... . ( 11 sec) [ -1607.0474] [Alpha ][ 0.125721] . ( 11 sec) [ -1607.0474] [Topology ] . ( 11 sec) [ -1607.0420] [Topology ] . ( 12 sec) [ -1607.0411] [Topology ] . Checking for NNIs, optimizing five branches... . ( 15 sec) [ -1606.5621] [Alpha ][ 0.062981] . ( 15 sec) [ -1606.5621] [Topology ] . ( 16 sec) [ -1606.5613] [Topology ] . Checking for NNIs, optimizing five branches... . ( 19 sec) [ -1606.5202] [Alpha ][ 0.031523] . ( 19 sec) [ -1606.5202] [Topology ] . ( 19 sec) [ -1606.5201] [Topology ] . Checking for NNIs, optimizing five branches... . ( 22 sec) [ -1606.5197] [Alpha ][ 0.015781] . ( 22 sec) [ -1606.5197] [Topology ] . ( 23 sec) [ -1606.5196] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -1606.519637. . Printing the most likely tree in file 'proteic_M2637_19x380_2006.phy_phyml_tree.txt'... . Time used 0h0m32s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 28.41user 0.00system 0:31.78elapsed 89%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps