.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2638_18x378_2006.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 75 patterns found. (out of a total of 378 sites) . 321 sites without polymorphism (84.92%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 3Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 0 sec) [ -1700.8671] [Alpha ][ 0.500960] . ( 0 sec) [ -1700.8671] [Topology ] . ( 1 sec) [ -1697.1437] [Topology ] . ( 1 sec) [ -1696.5765] [Topology ] . ( 2 sec) [ -1696.4520] [Topology ] . ( 2 sec) [ -1696.4234] [Topology ] . ( 2 sec) [ -1696.4165] [Topology ] . ( 3 sec) [ -1696.4149] [Topology ] . Checking for NNIs, optimizing five branches... . ( 5 sec) [ -1693.8018] [Alpha ][ 0.250961] . ( 5 sec) [ -1693.8018] [Topology ] . ( 5 sec) [ -1693.7994] [Topology ] . ( 6 sec) [ -1693.7989] [Topology ] . Checking for NNIs, optimizing five branches... . ( 8 sec) [ -1693.3291] [Alpha ][ 0.159379] . ( 8 sec) [ -1693.3291] [Topology ] . ( 8 sec) [ -1693.3244] [Topology ] . ( 9 sec) [ -1693.3235] [Topology ] . Checking for NNIs, optimizing five branches... . ( 11 sec) [ -1693.3234] [Alpha ][ 0.157847] . ( 11 sec) [ -1693.3234] [Topology ] . ( 11 sec) [ -1693.3231] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -1693.323129. . Printing the most likely tree in file 'proteic_M2638_18x378_2006.phy_phyml_tree.txt'... . Time used 0h0m15s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 14.77user 0.00system 0:15.65elapsed 94%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps