.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2639_19x331_2006.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 227 patterns found. (out of a total of 331 sites) . 124 sites without polymorphism (37.46%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 10Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 0 sec) [ -5780.2367] [Alpha ][ 0.500960] . ( 0 sec) [ -5780.2367] [Topology ] . ( 1 sec) [ -5754.7918] [Topology ] . ( 2 sec) [ -5747.5766] [Topology ] . ( 3 sec) [ -5749.2733] [Topology ] . Moving backward . ( 3 sec) [ -5746.2586] [Topology ] . ( 4 sec) [ -5744.3171] [Topology ] . ( 5 sec) [ -5743.7284] [Topology ] . ( 6 sec) [ -5743.6475] [Topology ] . ( 7 sec) [ -5743.6261] [Topology ] . ( 8 sec) [ -5743.6191] [Topology ] . Checking for NNIs, optimizing five branches... . ( 17 sec) [ -5743.4260] [Alpha ][ 0.529523] . ( 17 sec) [ -5743.4260] [Topology ] . ( 19 sec) [ -5743.3977] [Topology ] . ( 20 sec) [ -5743.3859] [Topology ] . ( 21 sec) [ -5743.3803] [Topology ] . ( 22 sec) [ -5743.3777] [Topology ] . ( 23 sec) [ -5743.3764] [Topology ] . ( 24 sec) [ -5743.3758] [Topology ] . Checking for NNIs, optimizing five branches... . ( 33 sec) [ -5743.3685] [Alpha ][ 0.535434] . ( 33 sec) [ -5743.3685] [Topology ] . ( 34 sec) [ -5743.3666] [Topology ] . ( 35 sec) [ -5743.3658] [Topology ] . Checking for NNIs, optimizing five branches... . ( 43 sec) [ -5743.3657] [Alpha ][ 0.536169] . ( 44 sec) [ -5743.3657] [Topology ] . ( 45 sec) [ -5743.3651] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -5743.365133. . Printing the most likely tree in file 'proteic_M2639_19x331_2006.phy_phyml_tree.txt'... . Time used 0h1m1s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 54.17user 0.00system 1:01.27elapsed 88%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps