..........................                                      
 ooooooooooooooooooooooooooooo        CURRENT SETTINGS        ooooooooooooooooooooooooooooooooooo
                                 ..........................                                      

                . Sequence filename : 				 proteic_M2640_18x243_2006.phy
                . Data type :             			 aa
                . Sequence format : 				 interleaved
                . Number of data sets : 			 1
                . Nb of bootstrapped data sets : 		 0
                . Model name : 					 WAG
                . Proportion of invariable sites :		 0.000000
                . Number of subst. rate categs : 		 4
                . Gamma distribution parameter : 		 estimated
                . 'Middle' of each rate class  : 		 mean
                . Amino acid equilibrium frequencies : 		 model
                . Optimise tree topology : 			 yes
                . Tree topology search : 			 NNIs
                . Starting tree : 				 BioNJ
                . Add random input tree : 			 no
                . Optimise branch lengths : 			 yes
                . Optimise substitution model parameters : 	 yes
                . Run ID : 					 none

 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo



. Compressing sequences...

. 160 patterns found. (out of a total of 243 sites) 

. 99 sites without polymorphism (40.74%).

. Computing pairwise distances...

. Building BioNJ tree...

. This analysis requires at least 7Mo of memory space.

. Maximizing likelihood (using NNI moves)...

. (    0 sec) [     -2517.5928] [Alpha              ][  1.082783]
. (    0 sec) [     -2517.5928] [Topology           ]
. (    2 sec) [     -2511.5164] [Topology           ]
. (    3 sec) [     -2510.9156] [Topology           ]
. (    4 sec) [     -2510.8267] [Topology           ]
. (    5 sec) [     -2510.8104] [Topology           ]
. (    6 sec) [     -2510.8068] [Topology           ]
. (    6 sec) [     -2510.8060] [Topology           ]

. Checking for NNIs, optimizing five branches...

. (   12 sec) [     -2510.7749] [Alpha              ][  1.138493]
. (   12 sec) [     -2510.7749] [Topology           ]
. (   13 sec) [     -2510.7726] [Topology           ]
. (   14 sec) [     -2510.7720] [Topology           ]

. Checking for NNIs, optimizing five branches...

. (   18 sec) [     -2510.7719] [Alpha              ][  1.141544]
. (   19 sec) [     -2510.7719] [Topology           ]
. (   19 sec) [     -2510.7717] [Topology           ]

. Checking for NNIs, optimizing five branches...


. Checking for NNIs, optimizing five branches...


. Log likelihood of the current tree: -2510.771729.

. Printing the most likely tree in file 'proteic_M2640_18x243_2006.phy_phyml_tree.txt'...


. Time used 0h0m29s

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
25.20user 0.00system 0:29.04elapsed 86%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps