.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2641_18x326_2006.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 243 patterns found. (out of a total of 326 sites) . 100 sites without polymorphism (30.67%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 10Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 1 sec) [ -5190.7718] [Alpha ][ 0.607649] . ( 1 sec) [ -5190.7718] [Topology ] . ( 2 sec) [ -5161.6235] [Topology ] . ( 2 sec) [ -5157.1353] [Topology ] . ( 3 sec) [ -5155.5391] [Topology ] . ( 4 sec) [ -5154.9097] [Topology ] . ( 6 sec) [ -5154.6184] [Topology ] . ( 7 sec) [ -5154.4740] [Topology ] . ( 9 sec) [ -5154.4004] [Topology ] . ( 10 sec) [ -5154.3623] [Topology ] . Checking for NNIs, optimizing five branches... . ( 19 sec) [ -5153.6964] [Alpha ][ 0.682511] . ( 19 sec) [ -5153.6964] [Topology ] . ( 20 sec) [ -5153.6349] [Topology ] . ( 21 sec) [ -5153.6081] [Topology ] . ( 22 sec) [ -5153.5946] [Topology ] . ( 24 sec) [ -5153.5877] [Topology ] . ( 25 sec) [ -5153.5842] [Topology ] . ( 26 sec) [ -5153.5823] [Topology ] . Checking for NNIs, optimizing five branches... . ( 35 sec) [ -5153.5800] [Alpha ][ 0.687271] . ( 36 sec) [ -5153.5800] [Topology ] . ( 37 sec) [ -5153.5788] [Topology ] . ( 37 sec) [ -5153.5782] [Topology ] . Checking for NNIs, optimizing five branches... . ( 46 sec) [ -5153.5782] [Alpha ][ 0.687271] . ( 46 sec) [ -5153.5782] [Topology ] . ( 47 sec) [ -5153.5779] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -5153.577906. . Printing the most likely tree in file 'proteic_M2641_18x326_2006.phy_phyml_tree.txt'... . Time used 0h1m8s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 55.25user 0.00system 1:07.36elapsed 82%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps