.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2899_25x444_2006.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 365 patterns found. (out of a total of 444 sites) . 112 sites without polymorphism (25.23%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 21Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 1 sec) [ -10056.3189] [Alpha ][ 0.527413] . ( 1 sec) [ -10056.3189] [Topology ] . ( 3 sec) [ -9992.5648] [Topology ] . ( 5 sec) [ -9980.7430] [Topology ] . ( 6 sec) [ -9970.0285] [Topology ] . ( 8 sec) [ -9967.7955] [Topology ] . ( 10 sec) [ -9966.7252] [Topology ] . ( 12 sec) [ -9966.1293] [Topology ] . ( 14 sec) [ -9965.7364] [Topology ] . ( 16 sec) [ -9965.4689] [Topology ] . ( 18 sec) [ -9965.2838] [Topology ] . Checking for NNIs, optimizing five branches... . ( 35 sec) [ -9961.1497] [Alpha ][ 0.639148] . ( 35 sec) [ -9961.1497] [Topology ] . ( 37 sec) [ -9960.8794] [Topology ] . ( 39 sec) [ -9960.7608] [Topology ] . ( 40 sec) [ -9960.6871] [Topology ] . ( 42 sec) [ -9960.6402] [Topology ] . ( 44 sec) [ -9960.6103] [Topology ] . ( 46 sec) [ -9960.5910] [Topology ] . Checking for NNIs, optimizing five branches... . ( 61 sec) [ -9960.5856] [Alpha ][ 0.643756] . ( 61 sec) [ -9960.5856] [Topology ] . ( 63 sec) [ -9960.5730] [Topology ] . ( 65 sec) [ -9960.5650] [Topology ] . ( 67 sec) [ -9960.5598] [Topology ] . ( 69 sec) [ -9960.5565] [Topology ] . ( 70 sec) [ -9960.5544] [Topology ] . ( 72 sec) [ -9960.5531] [Topology ] . Checking for NNIs, optimizing five branches... . ( 87 sec) [ -9960.5531] [Alpha ][ 0.643756] . ( 87 sec) [ -9960.5531] [Topology ] . ( 89 sec) [ -9960.5522] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -9960.552215. . Printing the most likely tree in file 'proteic_M2899_25x444_2006.phy_phyml_tree.txt'... . Time used 0h2m1s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 118.31user 0.00system 2:01.42elapsed 97%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps