.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2954_5x1006_2006.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 85 patterns found. (out of a total of 1006 sites) . 959 sites without polymorphism (95.33%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 1Mo of memory space. . Maximizing likelihood (using NNI moves)... . ( 0 sec) [ -3247.1494] [Alpha ][ 0.500960] . ( 0 sec) [ -3247.1494] [Topology ] . ( 0 sec) [ -3244.6107] [Topology ] . ( 0 sec) [ -3244.3861] [Topology ] . ( 0 sec) [ -3244.3677] [Topology ] . ( 0 sec) [ -3244.3658] [Topology ] . ( 0 sec) [ -3244.3619] [Topology ] . ( 0 sec) [ -3244.3327] [Topology ] . Checking for NNIs, optimizing five branches... . ( 0 sec) [ -3244.3233] [Alpha ][ 0.417104] . ( 0 sec) [ -3244.3233] [Topology ] . ( 0 sec) [ -3244.1371] [Topology ] . ( 1 sec) [ -3243.3249] [Topology ] . ( 1 sec) [ -3242.0532] [Topology ] . ( 1 sec) [ -3241.9157] [Topology ] . ( 1 sec) [ -3241.9055] [Topology ] . ( 1 sec) [ -3241.9045] [Topology ] . Checking for NNIs, optimizing five branches... . ( 1 sec) [ -3241.7508] [Alpha ][ 0.833146] . ( 1 sec) [ -3241.7508] [Topology ] . ( 1 sec) [ -3241.7489] [Topology ] . ( 1 sec) [ -3241.7488] [Topology ] . Checking for NNIs, optimizing five branches... . ( 2 sec) [ -3241.7403] [Alpha ][ 1.060225] . ( 2 sec) [ -3241.7403] [Topology ] . ( 2 sec) [ -3241.7401] [Topology ] . Checking for NNIs, optimizing five branches... . ( 2 sec) [ -3241.7401] [Alpha ][ 1.063610] . ( 2 sec) [ -3241.7401] [Topology ] . ( 2 sec) [ -3241.7401] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -3241.740121. . Printing the most likely tree in file 'proteic_M2954_5x1006_2006.phy_phyml_tree.txt'... . Time used 0h0m3s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 3.10user 0.00system 0:03.62elapsed 85%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps