Sequence filename : 		 /auto/dufayard/res/parc_wim/nucleic_M2572_191x990_2006.phy
Data type :             	 dna
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 GTR
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 75  N_GLOBL: 37  MAX_DIST: 37


. Log(lk) :               * ->    -3575.245687 
. Log(lk) :    -3575.245687 ->    -3558.933731  24 swaps done 
. Log(lk) :    -3558.933731 ->    -3557.799511  20 swaps done 
. Log(lk) :    -3557.799511 ->    -3557.696185  16 swaps done 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -3545.203591 ->    -3544.823952  12 swaps done 
. Log(lk) :    -3544.823952 ->    -3544.764084   9 swaps done 
. Log(lk) :    -3544.764084 ->    -3544.748836   7 swaps done 
. Log(lk) :    -3544.748836 ->    -3544.742923   9 swaps done 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -3544.640747 ->    -3544.633330   6 swaps done 
. Log(lk) :    -3544.633330 ->    -3544.631888   4 swaps done 
. Log(lk) :    -3544.631888 ->    -3544.631493   3 swaps done 
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
  making move: 198 -> 148 (0.000031)
Log (lk): -3544.631462

. Log(lk) :    -3544.631462 ->    -3544.631352   5 swaps done 
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -3544.631352
nr_d_L:  278096
nr_d_lk: 62926
nr_loc:  200
nr_glb:  38



. Time used 0h3m52s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

201.31user 0.00system 3:51.98elapsed 86%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps