Sequence filename : 		 /auto/dufayard/res/parc_wim/nucleic_M2599_66x1137_2006.phy
Data type :             	 dna
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 GTR
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 25  N_GLOBL: 12  MAX_DIST: 12


. Log(lk) :               * ->    -2189.028627 
. Log(lk) :    -2189.028627 ->    -2186.927644  12 swaps done 
. Log(lk) :    -2186.927644 ->    -2186.647718   9 swaps done 
. Log(lk) :    -2186.647718 ->    -2186.491903   5 swaps done 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -2174.108519 ->    -2174.060425   3 swaps done 
. Log(lk) :    -2174.060425 ->    -2174.052060   2 swaps done 
. Log(lk) :    -2174.052060 ->    -2174.050486   2 swaps done 
. Log(lk) :    -2174.050486 ->    -2174.050118   2 swaps done 
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -2174.050118
nr_d_L:  12624
nr_d_lk: 3678
nr_loc:  100
nr_glb:  12



. Time used 0h0m9s

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8.49user 0.00system 0:08.57elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps