Sequence filename : 		 /auto/dufayard/res/parc_wim/nucleic_M2600_69x814_2006.phy
Data type :             	 dna
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 GTR
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. 5 sites are made from completely undetermined states ('X', '-', '?' or 'N')...

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 27  N_GLOBL: 13  MAX_DIST: 13


. Log(lk) :               * ->    -1780.650113 
. Log(lk) :    -1780.650113 ->    -1779.929299  14 swaps done 
. Log(lk) :    -1779.929299 ->    -1779.766145   8 swaps done 
. Log(lk) :    -1779.766145 ->    -1779.480284   5 swaps done 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -1767.614868 ->    -1766.479321   7 swaps done 
. Log(lk) :    -1766.479321 ->    -1765.284975   1 swap  done
. Log(lk) :    -1765.284975 ->    -1765.074917   4 swaps done 
. Log(lk) :    -1765.074917 ->    -1765.028291   2 swaps done 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -1764.939207 ->    -1764.929964   1 swap  done
. Log(lk) :    -1764.929964 ->    -1764.927677   0 swap  done
. Log(lk) :    -1764.927677 ->    -1764.927107   1 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  making move: 43 -> 46 (0.215024)
  making move: 48 -> 7 (0.002517)
Log (lk): -1764.065121

. Log(lk) :    -1764.065121 ->    -1763.910559   3 swaps done 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -1763.910409 ->    -1763.898950   2 swaps done 
. Log(lk) :    -1763.898950 ->    -1763.897895   2 swaps done 
. Log(lk) :    -1763.897895 ->    -1763.897828   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -1763.897828
nr_d_L:  25502
nr_d_lk: 8385
nr_loc:  100
nr_glb:  13



. Time used 0h0m9s

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8.35user 0.00system 0:08.79elapsed 94%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps