Sequence filename : /auto/dufayard/res/parc_wim/nucleic_M2606_110x1206_2006.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... N_RGRFT: 43 N_GLOBL: 21 MAX_DIST: 21 . Log(lk) : * -> -30937.685622 . Log(lk) : -30937.685622 -> -30469.432978 10 swaps done . Log(lk) : -30469.432978 -> -30419.744608 6 swaps done . Log(lk) : -30419.744608 -> -30405.229068 4 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -27039.237377 -> -27001.814172 11 swaps done . Log(lk) : -27001.814172 -> -26990.569422 7 swaps done . Log(lk) : -26990.569422 -> -26989.001385 6 swaps done . Log(lk) : -26989.001385 -> -26988.142416 5 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -26968.698167 -> -26961.158380 5 swaps done . Log(lk) : -26961.158380 -> -26960.260442 4 swaps done . Log(lk) : -26960.260442 -> -26958.997814 4 swaps done . Log(lk) : -26958.997814 -> -26959.772513 4 swaps done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -26958.997814 -> -26956.690852 4 swaps done . Log(lk) : -26956.690852 -> -26954.320038 2 swaps done . Log(lk) : -26954.320038 -> -26953.918453 0 swap done . Log(lk) : -26953.918453 -> -26953.810907 0 swap done . Log(lk) : -26953.810907 -> -26953.773515 0 swap done . Log(lk) : -26953.773515 -> -26953.760185 0 swap done . Log(lk) : -26953.760185 -> -26953.755467 0 swap done . Log(lk) : -26953.755467 -> -26953.753756 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods making move: 14 -> 184 (0.617886) Log (lk): -26951.856987 . Log(lk) : -26951.856987 -> -26951.829560 0 swap done . Log(lk) : -26951.829560 -> -26951.825893 0 swap done . Log(lk) : -26951.825893 -> -26951.825048 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods -performing local edge length optimizations making move: 31 -> 27 (2.438025) Log (lk): -26948.791897 . Log(lk) : -26948.791897 -> -26948.770755 0 swap done . Log(lk) : -26948.770755 -> -26948.768458 0 swap done . Log(lk) : -26948.768458 -> -26948.767818 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods -performing local edge length optimizations -performing global edge length optimization making move: 109 -> 112 (0.315135) Log (lk): -26948.458646 . Log(lk) : -26948.458646 -> -26948.427102 0 swap done . Log(lk) : -26948.427102 -> -26948.423709 0 swap done . Log(lk) : -26948.423709 -> -26948.423067 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods -performing local edge length optimizations -performing global edge length optimization Log (lk): -26948.428643 nr_d_L: 184146 nr_d_lk: 41236 nr_loc: 201 nr_glb: 28 . Time used 0h4m51s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 259.77user 0.00system 4:51.36elapsed 89%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps