Sequence filename : 		 /auto/dufayard/res/parc_wim/nucleic_M2675_51x1537_2006.phy
Data type :             	 dna
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 GTR
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 19  N_GLOBL: 9  MAX_DIST: 9


. Log(lk) :               * ->    -8466.063732 
. Log(lk) :    -8466.063732 ->    -8363.143865   6 swaps done 
. Log(lk) :    -8363.143865 ->    -8339.840130   4 swaps done 
. Log(lk) :    -8339.840130 ->    -8335.889311   3 swaps done 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7901.294796 ->    -7882.564338   3 swaps done 
. Log(lk) :    -7882.564338 ->    -7878.175421   3 swaps done 
. Log(lk) :    -7878.175421 ->    -7876.298170   2 swaps done 
. Log(lk) :    -7876.298170 ->    -7875.867024   1 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7872.507285 ->    -7872.252998   0 swap  done
. Log(lk) :    -7872.252998 ->    -7872.165838   0 swap  done
. Log(lk) :    -7872.165838 ->    -7872.119497   0 swap  done
. Log(lk) :    -7872.119497 ->    -7872.103178   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7872.083432 ->    -7872.073600   0 swap  done
. Log(lk) :    -7872.073600 ->    -7872.069233   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  making move: 60 -> 55 (10.167430)
Log (lk): -7861.450652

. Log(lk) :    -7861.450652 ->    -7861.380859   1 swap  done
. Log(lk) :    -7861.380859 ->    -7861.377962   1 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7861.346161 ->    -7861.341253   1 swap  done
. Log(lk) :    -7861.341253 ->    -7861.340555   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  making move: 91 -> 94 (0.070801)
Log (lk): -7861.048014

. Log(lk) :    -7861.048014 ->    -7861.041378   0 swap  done
. Log(lk) :    -7861.041378 ->    -7861.040716   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -7861.040716
nr_d_L:  22686
nr_d_lk: 6375
nr_loc:  147
nr_glb:  9



. Time used 0h0m51s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

50.56user 0.00system 0:51.48elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps