Sequence filename : 		 /auto/dufayard/res/parc_wim/nucleic_M2733_60x1207_2006.phy
Data type :             	 dna
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 GTR
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 23  N_GLOBL: 11  MAX_DIST: 11


. Log(lk) :               * ->   -12257.419892 
. Log(lk) :   -12257.419892 ->   -12073.433531   6 swaps done 
. Log(lk) :   -12073.433531 ->   -12048.795192   3 swaps done 
. Log(lk) :   -12048.795192 ->   -12043.520215   3 swaps done 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -10984.655232 ->   -10973.841252   3 swaps done 
. Log(lk) :   -10973.841252 ->   -10972.076120   1 swap  done
. Log(lk) :   -10972.076120 ->   -10970.892678   0 swap  done
. Log(lk) :   -10970.892678 ->   -10970.704055   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -10953.191724 ->   -10952.858747   1 swap  done
. Log(lk) :   -10952.858747 ->   -10952.772594   0 swap  done
. Log(lk) :   -10952.772594 ->   -10952.748912   0 swap  done
. Log(lk) :   -10952.748912 ->   -10952.740251   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -10952.660623 ->   -10952.643782   0 swap  done
. Log(lk) :   -10952.643782 ->   -10952.637827   0 swap  done
. Log(lk) :   -10952.637827 ->   -10952.635509   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  making move: 50 -> 65 (2.324162)
Log (lk): -10948.313490

. Log(lk) :   -10948.313490 ->   -10948.204632   1 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -10948.174796 ->   -10948.015368   0 swap  done
. Log(lk) :   -10948.015368 ->   -10947.997736   0 swap  done
. Log(lk) :   -10947.997736 ->   -10947.994034   0 swap  done
. Log(lk) :   -10947.994034 ->   -10947.993141   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -10947.993076
nr_d_L:  20274
nr_d_lk: 6145
nr_loc:  100
nr_glb:  11



. Time used 0h0m59s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

53.42user 0.00system 0:58.62elapsed 91%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps