Sequence filename : 		 /auto/dufayard/res/parc_wim/nucleic_M2752_106x1292_2006.phy
Data type :             	 dna
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 GTR
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. 11 sites are made from completely undetermined states ('X', '-', '?' or 'N')...

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 41  N_GLOBL: 20  MAX_DIST: 20


. Log(lk) :               * ->    -8130.158021 
. Log(lk) :    -8130.158021 ->    -8099.228949  12 swaps done 
. Log(lk) :    -8099.228949 ->    -8096.241293   6 swaps done 
. Log(lk) :    -8096.241293 ->    -8093.108988   5 swaps done 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7889.645715 ->    -7885.695655   4 swaps done 
. Log(lk) :    -7885.695655 ->    -7883.508298   3 swaps done 
. Log(lk) :    -7883.508298 ->    -7882.191373   3 swaps done 
. Log(lk) :    -7882.191373 ->    -7881.966137   2 swaps done 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7880.987205 ->    -7880.865328   2 swaps done 
. Log(lk) :    -7880.865328 ->    -7880.789906   0 swap  done
. Log(lk) :    -7880.789906 ->    -7880.722048   0 swap  done
. Log(lk) :    -7880.722048 ->    -7880.686716   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7880.686178 ->    -7880.674763   0 swap  done
. Log(lk) :    -7880.674763 ->    -7880.672443   0 swap  done
. Log(lk) :    -7880.672443 ->    -7880.671831   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  making move: 85 -> 105 (0.122413)
Log (lk): -7880.457384

. Log(lk) :    -7880.457384 ->    -7880.451636   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7880.451123 ->    -7880.448505   0 swap  done
. Log(lk) :    -7880.448505 ->    -7880.446951   0 swap  done
. Log(lk) :    -7880.446951 ->    -7880.446026   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
  making move: 148 -> 149 (0.000517)
Log (lk): -7880.445431

. Log(lk) :    -7880.445431 ->    -7880.444952   1 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -7880.444949
nr_d_L:  124760
nr_d_lk: 28705
nr_loc:  232
nr_glb:  21



. Time used 0h2m15s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

131.49user 0.00system 2:15.60elapsed 96%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps