Sequence filename : 		 /auto/dufayard/res/parc_wim/nucleic_M2764_57x803_2006.phy
Data type :             	 dna
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 GTR
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. 3 sites are made from completely undetermined states ('X', '-', '?' or 'N')...

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 22  N_GLOBL: 11  MAX_DIST: 11


. Log(lk) :               * ->   -10677.444197 
. Log(lk) :   -10677.444197 ->   -10516.112129   7 swaps done 
. Log(lk) :   -10516.112129 ->   -10492.069272   5 swaps done 
. Log(lk) :   -10492.069272 ->   -10486.881751   4 swaps done 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -10173.565109 ->   -10164.915125   5 swaps done 
. Log(lk) :   -10164.915125 ->   -10160.568941   3 swaps done 
. Log(lk) :   -10160.568941 ->   -10159.455357   0 swap  done
. Log(lk) :   -10159.455357 ->   -10159.121516   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -10158.597783 ->   -10158.391526   0 swap  done
. Log(lk) :   -10158.391526 ->   -10158.285917   0 swap  done
. Log(lk) :   -10158.285917 ->   -10158.227145   0 swap  done
. Log(lk) :   -10158.227145 ->   -10158.193558   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -10158.159561


. Last optimization step...

. Log(lk) :               * ->   -10158.151228 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -10158.151228 ->   -10158.126395 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -10158.126395 ->   -10158.125819 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -10158.125819 ->   -10158.125506 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -10158.125506 ->   -10158.125301 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -10158.125301 ->   -10158.125301 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...
nr_d_L:  9912
nr_d_lk: 2792
nr_loc:  100
nr_glb:  11



. Time used 0h0m46s

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44.02user 0.00system 0:45.36elapsed 97%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps