Sequence filename : 		 /auto/dufayard/res/parc_wim/nucleic_M2770_86x1628_2006.phy
Data type :             	 dna
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 GTR
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 33  N_GLOBL: 16  MAX_DIST: 16


. Log(lk) :               * ->    -5948.403251 
. Log(lk) :    -5948.403251 ->    -5907.491365  10 swaps done 
. Log(lk) :    -5907.491365 ->    -5895.547753   5 swaps done 
. Log(lk) :    -5895.547753 ->    -5894.913366   3 swaps done 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5830.886401 ->    -5828.769280   2 swaps done 
. Log(lk) :    -5828.769280 ->    -5827.710288   1 swap  done
. Log(lk) :    -5827.710288 ->    -5827.602141   2 swaps done 
. Log(lk) :    -5827.602141 ->    -5827.264195   1 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5827.242478 ->    -5827.053833   0 swap  done
. Log(lk) :    -5827.053833 ->    -5827.040730   0 swap  done
. Log(lk) :    -5827.040730 ->    -5827.039319   0 swap  done
. Log(lk) :    -5827.039319 ->    -5827.038378   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  making move: 129 -> 133 (14.036157)
Log (lk): -5812.500353


. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5812.422761 ->    -5812.082054   1 swap  done
. Log(lk) :    -5812.082054 ->    -5811.967790   1 swap  done
. Log(lk) :    -5811.967790 ->    -5811.946839   1 swap  done
. Log(lk) :    -5811.946839 ->    -5811.943867   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5811.929648 ->    -5811.927073   0 swap  done
. Log(lk) :    -5811.927073 ->    -5811.923904   0 swap  done
. Log(lk) :    -5811.923904 ->    -5811.919484   0 swap  done
. Log(lk) :    -5811.919484 ->    -5811.915254   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5811.915253 ->    -5811.911517   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
  making move: 101 -> 106 (0.005679)
Log (lk): -5811.889390

. Log(lk) :    -5811.889390 ->    -5811.871287   1 swap  done
. Log(lk) :    -5811.871287 ->    -5811.848835   0 swap  done
. Log(lk) :    -5811.848835 ->    -5811.823859   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5811.823855 ->    -5811.798787   0 swap  done
. Log(lk) :    -5811.798787 ->    -5811.785986   0 swap  done
. Log(lk) :    -5811.785986 ->    -5811.782363   0 swap  done
. Log(lk) :    -5811.782363 ->    -5811.781470   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -5811.781407


. Last optimization step...

. Log(lk) :               * ->    -5811.781407 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5811.781407 ->    -5811.781407 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...
nr_d_L:  76352
nr_d_lk: 18689
nr_loc:  200
nr_glb:  17



. Time used 0h2m46s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

146.14user 0.00system 2:46.96elapsed 87%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps