Sequence filename : /auto/dufayard/res/parc_wim/nucleic_M2771_52x1896_2006.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... N_RGRFT: 20 N_GLOBL: 10 MAX_DIST: 10 . Log(lk) : * -> -15704.594295 . Log(lk) : -15704.594295 -> -15571.856530 5 swaps done . Log(lk) : -15571.856530 -> -15559.874950 3 swaps done . Log(lk) : -15559.874950 -> -15558.297233 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14038.651933 -> -14020.172348 3 swaps done . Log(lk) : -14020.172348 -> -14014.329875 0 swap done . Log(lk) : -14014.329875 -> -14011.945900 0 swap done . Log(lk) : -14011.945900 -> -14010.904476 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14004.690840 -> -14003.636013 0 swap done . Log(lk) : -14003.636013 -> -14003.162649 0 swap done . Log(lk) : -14003.162649 -> -14002.941338 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods making move: 49 -> 4 (0.922565) Log (lk): -13996.710620 . Log(lk) : -13996.710620 -> -13996.407856 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -13996.290670 -> -13996.048399 2 swaps done . Log(lk) : -13996.048399 -> -13996.266884 2 swaps done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -13996.048399 -> -13995.516950 2 swaps done . Log(lk) : -13995.516950 -> -13994.359523 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -13994.353888 -> -13993.567708 1 swap done . Log(lk) : -13993.567708 -> -13992.666574 1 swap done . Log(lk) : -13992.666574 -> -13992.385894 0 swap done . Log(lk) : -13992.385894 -> -13992.365807 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -13992.353416 -> -13992.350709 0 swap done . Log(lk) : -13992.350709 -> -13992.350127 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods -performing local edge length optimizations making move: 15 -> 31 (2.242669) Log (lk): -13987.816296 . Log(lk) : -13987.816296 -> -13987.717190 0 swap done . Log(lk) : -13987.717190 -> -13987.687502 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -13987.617152 -> -13987.601129 0 swap done . Log(lk) : -13987.601129 -> -13987.592242 0 swap done . Log(lk) : -13987.592242 -> -13987.588601 0 swap done . Log(lk) : -13987.588601 -> -13987.587639 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods -performing local edge length optimizations making move: 15 -> 32 (0.065470) Log (lk): -13987.280063 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -13987.278194 -> -13987.230169 0 swap done . Log(lk) : -13987.230169 -> -13987.223907 0 swap done . Log(lk) : -13987.223907 -> -13987.222342 0 swap done . Log(lk) : -13987.222342 -> -13987.221875 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods -performing local edge length optimizations -performing global edge length optimization Log (lk): -13987.227152 nr_d_L: 28566 nr_d_lk: 9359 nr_loc: 247 nr_glb: 10 . Time used 0h2m24s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 132.81user 0.00system 2:24.40elapsed 91%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps