Sequence filename : 		 /auto/dufayard/res/parc_wim/nucleic_M2772_77x900_2006.phy
Data type :             	 dna
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 GTR
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. 57 sites are made from completely undetermined states ('X', '-', '?' or 'N')...

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 30  N_GLOBL: 15  MAX_DIST: 15


. Log(lk) :               * ->    -7694.739257 
. Log(lk) :    -7694.739257 ->    -7539.534048  13 swaps done 
. Log(lk) :    -7539.534048 ->    -7515.971995   6 swaps done 
. Log(lk) :    -7515.971995 ->    -7512.700350   4 swaps done 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7216.468119 ->    -7209.853197   2 swaps done 
. Log(lk) :    -7209.853197 ->    -7208.885578   1 swap  done
. Log(lk) :    -7208.885578 ->    -7207.169055   1 swap  done
. Log(lk) :    -7207.169055 ->    -7204.405060   1 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7203.512130 ->    -7201.648646   1 swap  done
. Log(lk) :    -7201.648646 ->    -7200.553804   0 swap  done
. Log(lk) :    -7200.553804 ->    -7200.278887   0 swap  done
. Log(lk) :    -7200.278887 ->    -7200.150525   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7200.116012 ->    -7199.869321   1 swap  done
. Log(lk) :    -7199.869321 ->    -7199.004478   0 swap  done
. Log(lk) :    -7199.004478 ->    -7198.875951   0 swap  done
. Log(lk) :    -7198.875951 ->    -7198.847843   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7198.837662 ->    -7198.829644   0 swap  done
. Log(lk) :    -7198.829644 ->    -7198.827279   0 swap  done
. Log(lk) :    -7198.827279 ->    -7198.826533   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  making move: 136 -> 135 (1.973763)
Log (lk): -7196.589316

. Log(lk) :    -7196.589316 ->    -7196.551074   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7196.539922 ->    -7196.534227   0 swap  done
. Log(lk) :    -7196.534227 ->    -7196.532429   0 swap  done
. Log(lk) :    -7196.532429 ->    -7196.531746   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  making move: 66 -> 69 (0.053809)
Log (lk): -7196.428935

. Log(lk) :    -7196.428935 ->    -7196.417928   1 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7196.417215 ->    -7196.415865   1 swap  done
. Log(lk) :    -7196.415865 ->    -7196.415718   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -7196.415719
nr_d_L:  56840
nr_d_lk: 15340
nr_loc:  125
nr_glb:  15



. Time used 0h1m59s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

108.14user 0.00system 1:59.02elapsed 90%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps