Sequence filename : /auto/dufayard/res/parc_wim/nucleic_M2826_60x1398_2006.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... N_RGRFT: 23 N_GLOBL: 11 MAX_DIST: 11 . Log(lk) : * -> -15904.652413 . Log(lk) : -15904.652413 -> -15730.068177 6 swaps done . Log(lk) : -15730.068177 -> -15706.168035 3 swaps done . Log(lk) : -15706.168035 -> -15702.487787 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14402.383004 -> -14387.221822 3 swaps done . Log(lk) : -14387.221822 -> -14376.800949 3 swaps done . Log(lk) : -14376.800949 -> -14370.622792 1 swap done . Log(lk) : -14370.622792 -> -14369.378894 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14365.924199 -> -14365.166129 0 swap done . Log(lk) : -14365.166129 -> -14364.793672 0 swap done . Log(lk) : -14364.793672 -> -14364.596602 0 swap done . Log(lk) : -14364.596602 -> -14364.489225 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14364.371517 -> -14364.260380 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods making move: 33 -> 44 (8.511753) Log (lk): -14352.622902 . Log(lk) : -14352.622902 -> -14352.489710 0 swap done . Log(lk) : -14352.489710 -> -14352.452791 0 swap done . Log(lk) : -14352.452791 -> -14352.436269 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14352.370737 -> -14352.351082 0 swap done . Log(lk) : -14352.351082 -> -14352.340249 0 swap done . Log(lk) : -14352.340249 -> -14352.334114 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods -performing local edge length optimizations making move: 55 -> 62 (1.904961) Log (lk): -14348.946956 . Log(lk) : -14348.946956 -> -14348.811370 2 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14348.794072 -> -14348.577089 2 swaps done . Log(lk) : -14348.577089 -> -14346.790420 2 swaps done . Log(lk) : -14346.790420 -> -14345.845429 0 swap done . Log(lk) : -14345.845429 -> -14345.752634 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14345.734545 -> -14345.716406 0 swap done . Log(lk) : -14345.716406 -> -14345.711681 0 swap done . Log(lk) : -14345.711681 -> -14345.709875 0 swap done . Log(lk) : -14345.709875 -> -14345.708969 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods -performing local edge length optimizations -performing global edge length optimization Log (lk): -14345.710307 . Last optimization step... . Log(lk) : * -> -14345.709803 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14345.709803 -> -14345.708699 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14345.708699 -> -14345.708694 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14345.708694 -> -14345.708692 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14345.708692 -> -14345.708691 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -14345.708691 -> -14345.708690 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... nr_d_L: 25050 nr_d_lk: 9440 nr_loc: 103 nr_glb: 11 . Time used 0h1m58s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 102.00user 0.00system 1:58.88elapsed 85%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps