Sequence filename : 		 /auto/dufayard/res/parc_wim/nucleic_M2862_54x1011_2006.phy
Data type :             	 dna
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 GTR
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 21  N_GLOBL: 10  MAX_DIST: 10


. Log(lk) :               * ->   -18392.307261 
. Log(lk) :   -18392.307261 ->   -18115.593837   6 swaps done 
. Log(lk) :   -18115.593837 ->   -18087.749711   3 swaps done 
. Log(lk) :   -18087.749711 ->   -18083.203331   1 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -16388.991740 ->   -16344.624232   3 swaps done 
. Log(lk) :   -16344.624232 ->   -16340.299685   0 swap  done
. Log(lk) :   -16340.299685 ->   -16338.743063   0 swap  done
. Log(lk) :   -16338.743063 ->   -16337.985536   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -16285.826188 ->   -16275.764547   1 swap  done
. Log(lk) :   -16275.764547 ->   -16271.683263   0 swap  done
. Log(lk) :   -16271.683263 ->   -16269.714084   0 swap  done
. Log(lk) :   -16269.714084 ->   -16268.686205   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -16262.044187 ->   -16258.831719   0 swap  done
. Log(lk) :   -16258.831719 ->   -16257.401624   0 swap  done
. Log(lk) :   -16257.401624 ->   -16256.686419   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
  making move: 27 -> 28 (0.484962)
Log (lk): -16256.011044

. Log(lk) :   -16256.011044 ->   -16255.921434   1 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -16253.654511 ->   -16253.112984   0 swap  done
. Log(lk) :   -16253.112984 ->   -16252.915267   0 swap  done
. Log(lk) :   -16252.915267 ->   -16252.816842   0 swap  done
. Log(lk) :   -16252.816842 ->   -16252.765249   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -16252.496736 ->   -16252.353360   0 swap  done
. Log(lk) :   -16252.353360 ->   -16252.291310   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
  making move: 21 -> 27 (0.001934)
Log (lk): -16252.285385

. Log(lk) :   -16252.285385 ->   -16252.222731   1 swap  done
. Log(lk) :   -16252.222731 ->   -16252.221470   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -16252.098760 ->   -16252.070610   0 swap  done
. Log(lk) :   -16252.070610 ->   -16252.061535   0 swap  done
. Log(lk) :   -16252.061535 ->   -16252.057056   0 swap  done
. Log(lk) :   -16252.057056 ->   -16252.054694   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -16252.039414 ->   -16252.031907   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -16252.033991


. Last optimization step...

. Log(lk) :               * ->   -16252.032130 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -16252.032130 ->   -16252.028247 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -16252.028247 ->   -16252.028178 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -16252.028178 ->   -16252.028178 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...
nr_d_L:  25392
nr_d_lk: 7533
nr_loc:  300
nr_glb:  13



. Time used 0h1m52s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

92.57user 0.00system 1:52.26elapsed 82%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps