Sequence filename : 		 /auto/dufayard/res/parc_wim/nucleic_M2922_77x1101_2006.phy
Data type :             	 dna
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 GTR
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 30  N_GLOBL: 15  MAX_DIST: 15


. Log(lk) :               * ->    -3328.250315 
. Log(lk) :    -3328.250315 ->    -3311.963489  15 swaps done 
. Log(lk) :    -3311.963489 ->    -3303.139758   6 swaps done 
. Log(lk) :    -3303.139758 ->    -3300.473615   3 swaps done 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -3063.469664 ->    -3055.318749   5 swaps done 
. Log(lk) :    -3055.318749 ->    -3053.833583   3 swaps done 
. Log(lk) :    -3053.833583 ->    -3053.269157   1 swap  done
. Log(lk) :    -3053.269157 ->    -3053.058514   1 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -3051.350606 ->    -3051.148214   1 swap  done
. Log(lk) :    -3051.148214 ->    -3051.111161   0 swap  done
. Log(lk) :    -3051.111161 ->    -3051.101507   0 swap  done
. Log(lk) :    -3051.101507 ->    -3051.098892   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -3051.085095 ->    -3051.084008   0 swap  done
. Log(lk) :    -3051.084008 ->    -3051.083710   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  making move: 60 -> 101 (6.846524)
  making move: 60 -> 92 (0.056280)
  making move: 85 -> 92 (0.000296)
  making move: 92 -> 86 (0.009830)
Log (lk): -3043.817730

. Log(lk) :    -3043.817730 ->    -3043.816221   2 swaps done 
. Log(lk) :    -3043.816221 ->    -3043.816200   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -3043.816200
nr_d_L:  37170
nr_d_lk: 10269
nr_loc:  100
nr_glb:  15



. Time used 0h0m25s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

24.04user 0.00system 0:25.15elapsed 95%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps