Sequence filename : /auto/dufayard/res/parc_wim/nucleic_M2974_56x827_2006.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... N_RGRFT: 21 N_GLOBL: 10 MAX_DIST: 10 . Log(lk) : * -> -6131.713801 . Log(lk) : -6131.713801 -> -6056.999170 7 swaps done . Log(lk) : -6056.999170 -> -6050.515467 4 swaps done . Log(lk) : -6050.515467 -> -6048.665499 3 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5407.949769 -> -5396.583327 4 swaps done . Log(lk) : -5396.583327 -> -5393.462110 2 swaps done . Log(lk) : -5393.462110 -> -5392.544084 2 swaps done . Log(lk) : -5392.544084 -> -5392.279919 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5388.380853 -> -5387.972842 1 swap done . Log(lk) : -5387.972842 -> -5387.796360 1 swap done . Log(lk) : -5387.796360 -> -5387.832180 1 swap done . Moving backward (topology + branch lengths) . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5387.796360 -> -5387.580260 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5387.580133 -> -5387.455114 0 swap done . Log(lk) : -5387.455114 -> -5387.419835 0 swap done . Log(lk) : -5387.419835 -> -5387.405729 0 swap done . Log(lk) : -5387.405729 -> -5387.399454 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5387.395015 -> -5387.390734 0 swap done . Log(lk) : -5387.390734 -> -5387.388564 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods -performing local edge length optimizations -performing global edge length optimization making move: 8 -> 16 (0.001263) Log (lk): -5387.386928 . Log(lk) : -5387.386928 -> -5387.386252 1 swap done Trying SPR moves -calculating tree distances and estimating likelihoods -performing local edge length optimizations -performing global edge length optimization making move: 7 -> 15 (0.000030) Log (lk): -5387.386173 . Log(lk) : -5387.386173 -> -5387.385942 1 swap done Trying SPR moves -calculating tree distances and estimating likelihoods -performing local edge length optimizations -performing global edge length optimization Log (lk): -5387.385956 nr_d_L: 27600 nr_d_lk: 7824 nr_loc: 300 nr_glb: 12 . Time used 0h0m43s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 40.24user 0.00system 0:43.01elapsed 93%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps