Sequence filename : /auto/dufayard/res/parc_wim/nucleic_M2975_93x982_2006.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... N_RGRFT: 36 N_GLOBL: 18 MAX_DIST: 18 . Log(lk) : * -> -13558.180885 . Log(lk) : -13558.180885 -> -13313.412318 11 swaps done . Log(lk) : -13313.412318 -> -13278.815709 6 swaps done . Log(lk) : -13278.815709 -> -13268.238698 4 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12345.387194 -> -12328.944973 5 swaps done . Log(lk) : -12328.944973 -> -12323.629120 3 swaps done . Log(lk) : -12323.629120 -> -12320.849422 3 swaps done . Log(lk) : -12320.849422 -> -12318.411206 3 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12316.114449 -> -12312.689687 4 swaps done . Log(lk) : -12312.689687 -> -12308.253549 3 swaps done . Log(lk) : -12308.253549 -> -12306.802600 2 swaps done . Log(lk) : -12306.802600 -> -12305.745687 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12305.706979 -> -12303.672438 1 swap done . Log(lk) : -12303.672438 -> -12301.089638 1 swap done . Log(lk) : -12301.089638 -> -12299.924034 0 swap done . Log(lk) : -12299.924034 -> -12299.710631 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12299.704572 -> -12299.641165 0 swap done . Log(lk) : -12299.641165 -> -12299.620849 0 swap done . Log(lk) : -12299.620849 -> -12299.613833 0 swap done . Log(lk) : -12299.613833 -> -12299.611322 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods -performing local edge length optimizations -performing global edge length optimization Log (lk): -12299.611194 . Last optimization step... . Log(lk) : * -> -12299.611194 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12299.611194 -> -12299.611137 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12299.611137 -> -12299.611127 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12299.611127 -> -12299.611121 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12299.611121 -> -12299.611120 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -12299.611120 -> -12299.611120 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... nr_d_L: 31496 nr_d_lk: 7388 nr_loc: 100 nr_glb: 18 . Time used 0h2m26s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 143.54user 0.00system 2:25.45elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps