Sequence filename : 		 /auto/dufayard/res/parc_wim/proteic_M1373_23x392_2003.phy
Data type :             	 aa
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 WAG
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 8  N_GLOBL: 4  MAX_DIST: 4


. Log(lk) :               * ->    -3605.970878 
. Log(lk) :    -3605.970878 ->    -3581.570059   3 swaps done 
. Log(lk) :    -3581.570059 ->    -3578.185700   1 swap  done
. Log(lk) :    -3578.185700 ->    -3577.870426   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -3541.234593 ->    -3540.445542   0 swap  done
. Log(lk) :    -3540.445542 ->    -3540.249964   0 swap  done
. Log(lk) :    -3540.249964 ->    -3540.174789   0 swap  done
. Log(lk) :    -3540.174789 ->    -3540.143766   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -3540.143729 ->    -3540.130616   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  making move: 9 -> 35 (1.737640)
Log (lk): -3536.483380

. Log(lk) :    -3536.483380 ->    -3536.479285   0 swap  done
. Log(lk) :    -3536.479285 ->    -3536.479121   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  making move: 19 -> 25 (0.714376)
Log (lk): -3535.732555

. Log(lk) :    -3535.732555 ->    -3535.682470   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -3535.682458 ->    -3535.675786   0 swap  done
. Log(lk) :    -3535.675786 ->    -3535.673344   0 swap  done
. Log(lk) :    -3535.673344 ->    -3535.672329   0 swap  done
. Log(lk) :    -3535.672329 ->    -3535.671897   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -3535.671897
nr_d_L:  2432
nr_d_lk: 1224
nr_loc:  125
nr_glb:  4


. Time used 0h0m57s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

56.21user 0.00system 0:56.49elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps