Sequence filename : 		 /auto/dufayard/res/parc_wim/proteic_M1375_23x530_2003.phy
Data type :             	 aa
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 WAG
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 8  N_GLOBL: 4  MAX_DIST: 4


. Log(lk) :               * ->    -8021.282391 
. Log(lk) :    -8021.282391 ->    -7938.563832   3 swaps done 
. Log(lk) :    -7938.563832 ->    -7911.258892   3 swaps done 
. Log(lk) :    -7911.258892 ->    -7896.420215   2 swaps done 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7794.402703 ->    -7791.363350   2 swaps done 
. Log(lk) :    -7791.363350 ->    -7790.601666   1 swap  done
. Log(lk) :    -7790.601666 ->    -7790.262678   0 swap  done
. Log(lk) :    -7790.262678 ->    -7790.104898   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7790.096145 ->    -7790.003252   0 swap  done
. Log(lk) :    -7790.003252 ->    -7789.944839   0 swap  done
. Log(lk) :    -7789.944839 ->    -7789.906141   0 swap  done
. Log(lk) :    -7789.906141 ->    -7789.879612   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  making move: 0 -> 4 (2.091568)
  making move: 2 -> 14 (1.239919)
  making move: 41 -> 1 (1.078541)
  making move: 42 -> 14 (1.403634)
Log (lk): -7775.844611


. Optimisation of the gamma shape parameter...

. Log(lk) :    -7775.838382 ->    -7774.865614   1 swap  done
. Log(lk) :    -7774.865614 ->    -7772.464126   0 swap  done
. Log(lk) :    -7772.464126 ->    -7771.627647   0 swap  done
. Log(lk) :    -7771.627647 ->    -7771.418597   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7771.415665 ->    -7771.362373   0 swap  done
. Log(lk) :    -7771.362373 ->    -7771.348339   0 swap  done
. Log(lk) :    -7771.348339 ->    -7771.344410   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  making move: 41 -> 28 (1.926318)
Log (lk): -7767.746083

. Log(lk) :    -7767.746083 ->    -7767.707552   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7767.707523 ->    -7767.699244   0 swap  done
. Log(lk) :    -7767.699244 ->    -7767.696246   0 swap  done
. Log(lk) :    -7767.696246 ->    -7767.694956   0 swap  done
. Log(lk) :    -7767.694956 ->    -7767.694362   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -7767.701446
nr_d_L:  2450
nr_d_lk: 1206
nr_loc:  100
nr_glb:  4


. Time used 0h1m58s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

109.46user 0.00system 1:58.59elapsed 92%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps