Sequence filename : 		 /auto/dufayard/res/parc_wim/proteic_M1376_36x484_2003.phy
Data type :             	 aa
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 WAG
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 13  N_GLOBL: 6  MAX_DIST: 6


. Log(lk) :               * ->   -11776.777417 
. Log(lk) :   -11776.777417 ->   -11679.887864   5 swaps done 
. Log(lk) :   -11679.887864 ->   -11662.122664   4 swaps done 
. Log(lk) :   -11662.122664 ->   -11659.337245   1 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -11540.543485 ->   -11538.664417   2 swaps done 
. Log(lk) :   -11538.664417 ->   -11538.264575   1 swap  done
. Log(lk) :   -11538.264575 ->   -11538.388004   1 swap  done

. Moving backward (topology + branch lengths) 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -11538.264575 ->   -11537.835564   1 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -11537.835564 ->   -11537.639764   0 swap  done
. Log(lk) :   -11537.639764 ->   -11537.623085   0 swap  done
. Log(lk) :   -11537.623085 ->   -11537.619038   0 swap  done
. Log(lk) :   -11537.619038 ->   -11537.617859   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -11537.617444 ->   -11537.616994   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  making move: 31 -> 17 (0.859183)
Log (lk): -11531.884205

. Log(lk) :   -11531.884205 ->   -11531.337511   1 swap  done
. Log(lk) :   -11531.337511 ->   -11531.128618   0 swap  done
. Log(lk) :   -11531.128618 ->   -11531.108292   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -11531.097809 ->   -11531.094750   0 swap  done
. Log(lk) :   -11531.094750 ->   -11531.094143   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -11531.106034
nr_d_L:  4628
nr_d_lk: 2133
nr_loc:  100
nr_glb:  6


. Time used 0h2m38s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

157.84user 0.00system 2:38.13elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps