Sequence filename : 		 /auto/dufayard/res/parc_wim/proteic_M1377_19x1566_2003.phy
Data type :             	 aa
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 WAG
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 7  N_GLOBL: 3  MAX_DIST: 3


. Log(lk) :               * ->   -18000.037465 
. Log(lk) :   -18000.037465 ->   -17860.821351   1 swap  done
. Log(lk) :   -17860.821351 ->   -17846.661978   1 swap  done
. Log(lk) :   -17846.661978 ->   -17845.003234   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -17633.517359 ->   -17629.579611   1 swap  done
. Log(lk) :   -17629.579611 ->   -17623.007778   1 swap  done
. Log(lk) :   -17623.007778 ->   -17618.897141   1 swap  done
. Log(lk) :   -17618.897141 ->   -17618.231560   1 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -17618.226582 ->   -17610.157731   1 swap  done
. Log(lk) :   -17610.157731 ->   -17609.495394   0 swap  done
. Log(lk) :   -17609.495394 ->   -17609.417192   0 swap  done
. Log(lk) :   -17609.417192 ->   -17609.397396   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -17609.395806 ->   -17609.389851   0 swap  done
. Log(lk) :   -17609.389851 ->   -17609.387880   0 swap  done
. Log(lk) :   -17609.387880 ->   -17609.387168   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  making move: 25 -> 19 (7.017572)
Log (lk): -17601.522841

. Log(lk) :   -17601.522841 ->   -17601.396403   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -17601.395202 ->   -17601.378707   0 swap  done
. Log(lk) :   -17601.378707 ->   -17601.375046   0 swap  done
. Log(lk) :   -17601.375046 ->   -17601.373986   0 swap  done
. Log(lk) :   -17601.373986 ->   -17601.373616   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  making move: 5 -> 9 (7.012026)
Log (lk): -17593.229819


. Optimisation of the gamma shape parameter...

. Log(lk) :   -17593.227376 ->   -17590.269145   2 swaps done 
. Log(lk) :   -17590.269145 ->   -17572.444377   2 swaps done 
. Log(lk) :   -17572.444377 ->   -17558.350999   0 swap  done
. Log(lk) :   -17558.350999 ->   -17557.055917   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -17557.055252 ->   -17556.783538   0 swap  done
. Log(lk) :   -17556.783538 ->   -17556.711368   0 swap  done
. Log(lk) :   -17556.711368 ->   -17556.691848   0 swap  done
. Log(lk) :   -17556.691848 ->   -17556.686526   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  making move: 9 -> 3 (4.075526)
Log (lk): -17551.653774


. Optimisation of the gamma shape parameter...

. Log(lk) :   -17551.646300 ->   -17551.136512   0 swap  done
. Log(lk) :   -17551.136512 ->   -17551.110598   0 swap  done
. Log(lk) :   -17551.110598 ->   -17551.104727   0 swap  done
. Log(lk) :   -17551.104727 ->   -17551.102612   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -17551.102598 ->   -17551.101730   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -17551.126857
nr_d_L:  1888
nr_d_lk: 1134
nr_loc:  148
nr_glb:  3


. Time used 0h5m8s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

289.48user 0.00system 5:08.14elapsed 93%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps