Sequence filename : 		 /auto/dufayard/res/parc_wim/proteic_M1379_9x1557_2003.phy
Data type :             	 aa
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 WAG
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 3  N_GLOBL: 1  MAX_DIST: 1


. Log(lk) :               * ->   -11751.848792 
. Log(lk) :   -11751.848792 ->   -11707.463332   1 swap  done
. Log(lk) :   -11707.463332 ->   -11705.354043   0 swap  done
. Log(lk) :   -11705.354043 ->   -11705.198967   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -11637.273555 ->   -11635.693811   0 swap  done
. Log(lk) :   -11635.693811 ->   -11635.396380   0 swap  done
. Log(lk) :   -11635.396380 ->   -11635.308754   0 swap  done
. Log(lk) :   -11635.308754 ->   -11635.281803   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
  making move: 2 -> 14 (0.475000)
Log (lk): -11634.978924


. Optimisation of the gamma shape parameter...

. Log(lk) :   -11634.977724 ->   -11634.588285   0 swap  done
. Log(lk) :   -11634.588285 ->   -11634.550055   0 swap  done
. Log(lk) :   -11634.550055 ->   -11634.544268   0 swap  done
. Log(lk) :   -11634.544268 ->   -11634.543135   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -11634.542760 ->   -11634.542487   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -11634.554526
nr_d_L:  96
nr_d_lk: 84
nr_loc:  84
nr_glb:  2


. Time used 0h0m50s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

42.71user 0.00system 0:49.31elapsed 86%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps