Sequence filename : /auto/dufayard/res/parc_wim/proteic_M1380_9x1558_2003.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... N_RGRFT: 3 N_GLOBL: 1 MAX_DIST: 1 . Log(lk) : * -> -12153.905341 . Log(lk) : -12153.905341 -> -12109.766406 1 swap done . Log(lk) : -12109.766406 -> -12106.838967 0 swap done . Log(lk) : -12106.838967 -> -12106.562543 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -12025.155530 -> -12023.712313 0 swap done . Log(lk) : -12023.712313 -> -12023.490369 0 swap done . Log(lk) : -12023.490369 -> -12023.426067 0 swap done . Log(lk) : -12023.426067 -> -12023.406355 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods -performing local edge length optimizations -performing global edge length optimization Log (lk): -12023.423316 . Last optimization step... . Log(lk) : * -> -12023.402267 . Optimisation of the gamma shape parameter... . Log(lk) : -12023.402267 -> -12023.402205 . Optimisation of the gamma shape parameter... . Log(lk) : -12023.402205 -> -12023.402203 . Optimisation of the gamma shape parameter... . Log(lk) : -12023.402203 -> -12023.402201 . Optimisation of the gamma shape parameter... . Log(lk) : -12023.402201 -> -12023.402201 . Optimisation of the gamma shape parameter... nr_d_L: 48 nr_d_lk: 42 nr_loc: 42 nr_glb: 1 . Time used 0h0m36s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 27.57user 0.00system 0:35.87elapsed 76%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps