Sequence filename : 		 /auto/dufayard/res/parc_wim/proteic_M1382_9x1560_2003.phy
Data type :             	 aa
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 WAG
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 3  N_GLOBL: 1  MAX_DIST: 1


. Log(lk) :               * ->   -12489.298527 
. Log(lk) :   -12489.298527 ->   -12453.390283   1 swap  done
. Log(lk) :   -12453.390283 ->   -12451.296146   1 swap  done
. Log(lk) :   -12451.296146 ->   -12437.366427   1 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -12345.571661 ->   -12336.408563   0 swap  done
. Log(lk) :   -12336.408563 ->   -12335.483279   0 swap  done
. Log(lk) :   -12335.483279 ->   -12335.268711   0 swap  done
. Log(lk) :   -12335.268711 ->   -12335.209785   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -12335.208201 ->   -12335.191162   0 swap  done
. Log(lk) :   -12335.191162 ->   -12335.186149   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -12335.186327


. Last optimization step...

. Log(lk) :               * ->   -12335.185864 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -12335.185864 ->   -12335.185859 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -12335.185859 ->   -12335.185859 

. Optimisation of the gamma shape parameter...
nr_d_L:  48
nr_d_lk: 42
nr_loc:  42
nr_glb:  1


. Time used 0h0m29s

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28.41user 0.00system 0:28.72elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps