Sequence filename : 		 /auto/dufayard/res/parc_wim/proteic_M1383_11x1561_2003.phy
Data type :             	 aa
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 WAG
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 3  N_GLOBL: 1  MAX_DIST: 1


. Log(lk) :               * ->   -13931.352865 
. Log(lk) :   -13931.352865 ->   -13874.190778   1 swap  done
. Log(lk) :   -13874.190778 ->   -13871.470428   0 swap  done
. Log(lk) :   -13871.470428 ->   -13871.238131   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -13732.289446 ->   -13730.551217   0 swap  done
. Log(lk) :   -13730.551217 ->   -13730.293468   0 swap  done
. Log(lk) :   -13730.293468 ->   -13730.202245   0 swap  done
. Log(lk) :   -13730.202245 ->   -13730.168218   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
  making move: 16 -> 17 (0.024502)
Log (lk): -13730.143049


. Optimisation of the gamma shape parameter...

. Log(lk) :   -13730.143018 ->   -13730.121182   0 swap  done
. Log(lk) :   -13730.121182 ->   -13730.119263   0 swap  done
. Log(lk) :   -13730.119263 ->   -13730.118892   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -13730.120313
nr_d_L:  128
nr_d_lk: 111
nr_loc:  111
nr_glb:  2


. Time used 0h1m6s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

56.60user 0.00system 1:05.76elapsed 86%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps