Sequence filename : /auto/dufayard/res/parc_wim/proteic_M1384_11x391_2003.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... N_RGRFT: 3 N_GLOBL: 1 MAX_DIST: 1 . Log(lk) : * -> -2909.150899 . Log(lk) : -2909.150899 -> -2899.778906 1 swap done . Log(lk) : -2899.778906 -> -2898.930230 1 swap done . Log(lk) : -2898.930230 -> -2898.883172 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -2883.175336 -> -2882.922696 0 swap done . Log(lk) : -2882.922696 -> -2882.904067 0 swap done . Log(lk) : -2882.904067 -> -2882.900269 0 swap done . Log(lk) : -2882.900269 -> -2882.899335 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods -performing local edge length optimizations -performing global edge length optimization Log (lk): -2882.899335 nr_d_L: 64 nr_d_lk: 57 nr_loc: 57 nr_glb: 1 . Time used 0h0m10s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 9.79user 0.00system 0:09.93elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps