Sequence filename : 		 /auto/dufayard/res/parc_wim/proteic_M1385_11x530_2003.phy
Data type :             	 aa
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 WAG
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 3  N_GLOBL: 1  MAX_DIST: 1


. Log(lk) :               * ->    -5691.157782 
. Log(lk) :    -5691.157782 ->    -5663.210977   1 swap  done
. Log(lk) :    -5663.210977 ->    -5659.918342   1 swap  done
. Log(lk) :    -5659.918342 ->    -5659.508137   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5610.372626 ->    -5609.920023   0 swap  done
. Log(lk) :    -5609.920023 ->    -5609.851293   0 swap  done
. Log(lk) :    -5609.851293 ->    -5609.829986   0 swap  done
. Log(lk) :    -5609.829986 ->    -5609.822433   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5609.822107 ->    -5609.819415   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  making move: 15 -> 0 (0.200632)
Log (lk): -5609.563105

. Log(lk) :    -5609.563105 ->    -5609.498203   0 swap  done
. Log(lk) :    -5609.498203 ->    -5609.478757   0 swap  done
. Log(lk) :    -5609.478757 ->    -5609.471293   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5609.470243 ->    -5609.467651   0 swap  done
. Log(lk) :    -5609.467651 ->    -5609.466613   0 swap  done
. Log(lk) :    -5609.466613 ->    -5609.466191   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -5609.471065


. Last optimization step...

. Log(lk) :               * ->    -5609.467620 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5609.467620 ->    -5609.467426 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5609.467426 ->    -5609.467407 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -5609.467407 ->    -5609.467407 

. Optimisation of the gamma shape parameter...
nr_d_L:  128
nr_d_lk: 112
nr_loc:  57
nr_glb:  1


. Time used 0h0m32s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

23.15user 0.00system 0:31.32elapsed 73%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps