Sequence filename : 		 /auto/dufayard/res/parc_wim/proteic_M1392_57x430_2003.phy
Data type :             	 aa
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 WAG
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 22  N_GLOBL: 11  MAX_DIST: 11


. Log(lk) :               * ->    -8403.754297 
. Log(lk) :    -8403.754297 ->    -8326.991418   7 swaps done 
. Log(lk) :    -8326.991418 ->    -8301.159368   5 swaps done 
. Log(lk) :    -8301.159368 ->    -8296.515417   3 swaps done 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8187.430610 ->    -8181.285287   4 swaps done 
. Log(lk) :    -8181.285287 ->    -8179.430245   2 swaps done 
. Log(lk) :    -8179.430245 ->    -8178.994920   0 swap  done
. Log(lk) :    -8178.994920 ->    -8178.797402   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8178.797042 ->    -8178.687610   0 swap  done
. Log(lk) :    -8178.687610 ->    -8178.621408   0 swap  done
. Log(lk) :    -8178.621408 ->    -8178.580038   0 swap  done
. Log(lk) :    -8178.580038 ->    -8178.553745   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  making move: 16 -> 25 (1.566270)
  making move: 26 -> 18 (0.198246)
  making move: 107 -> 110 (3.648212)
Log (lk): -8171.448231


. Optimisation of the gamma shape parameter...

. Log(lk) :    -8171.437579 ->    -8171.351791   2 swaps done 
. Log(lk) :    -8171.351791 ->    -8171.349274   1 swap  done
. Log(lk) :    -8171.349274 ->    -8171.328890   1 swap  done
. Log(lk) :    -8171.328890 ->    -8171.328307   1 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  making move: 6 -> 12 (0.251477)
Log (lk): -8169.526068


. Optimisation of the gamma shape parameter...

. Log(lk) :    -8169.526012 ->    -8169.259287   1 swap  done
. Log(lk) :    -8169.259287 ->    -8169.208802   1 swap  done
. Log(lk) :    -8169.208802 ->    -8169.194243   0 swap  done
. Log(lk) :    -8169.194243 ->    -8169.188560   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8169.188367 ->    -8169.185425   0 swap  done
. Log(lk) :    -8169.185425 ->    -8169.183699   0 swap  done
. Log(lk) :    -8169.183699 ->    -8169.182609   0 swap  done
. Log(lk) :    -8169.182609 ->    -8169.181895   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  making move: 3 -> 109 (0.091974)
Log (lk): -8168.993983


. Optimisation of the gamma shape parameter...

. Log(lk) :    -8168.993974 ->    -8168.986829   0 swap  done
. Log(lk) :    -8168.986829 ->    -8168.984125   0 swap  done
. Log(lk) :    -8168.984125 ->    -8168.982504   0 swap  done
. Log(lk) :    -8168.982504 ->    -8168.981442   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8168.981369 ->    -8168.980617   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  making move: 79 -> 87 (0.580757)
Log (lk): -8167.598671

. Log(lk) :    -8167.598671 ->    -8167.555554   0 swap  done
. Log(lk) :    -8167.555554 ->    -8167.550174   0 swap  done
. Log(lk) :    -8167.550174 ->    -8167.549043   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8167.548978 ->    -8167.548716   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -8167.548873
nr_d_L:  45858
nr_d_lk: 13986
nr_loc:  116
nr_glb:  11


. Time used 0h12m36s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

647.39user 0.00system 12:36.50elapsed 85%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps