Sequence filename : 		 /auto/dufayard/res/parc_wim/proteic_M1499_22x513_2003.phy
Data type :             	 aa
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 WAG
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 8  N_GLOBL: 4  MAX_DIST: 4


. Log(lk) :               * ->   -12579.460350 
. Log(lk) :   -12579.460350 ->   -12520.561229   2 swaps done 
. Log(lk) :   -12520.561229 ->   -12514.325554   1 swap  done
. Log(lk) :   -12514.325554 ->   -12513.440696   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -12472.295118 ->   -12471.879529   0 swap  done
. Log(lk) :   -12471.879529 ->   -12471.763577   0 swap  done
. Log(lk) :   -12471.763577 ->   -12471.707282   0 swap  done
. Log(lk) :   -12471.707282 ->   -12471.677027   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :   -12471.676953 ->   -12471.660168   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -12471.645897


. Last optimization step...

. Log(lk) :               * ->   -12471.644187 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -12471.644187 ->   -12471.644063 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -12471.644063 ->   -12471.643915 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -12471.643915 ->   -12471.643812 

. Optimisation of the gamma shape parameter...

. Log(lk) :   -12471.643812 ->   -12471.643812 

. Optimisation of the gamma shape parameter...
nr_d_L:  896
nr_d_lk: 376
nr_loc:  100
nr_glb:  4


. Time used 0h1m22s

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72.61user 0.00system 1:21.70elapsed 88%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps