Sequence filename : 		 /auto/dufayard/res/parc_wim/proteic_M1503_23x479_2003.phy
Data type :             	 aa
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 WAG
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 8  N_GLOBL: 4  MAX_DIST: 4


. Log(lk) :               * ->   -10058.219163 
. Log(lk) :   -10058.219163 ->    -9981.821931   2 swaps done 
. Log(lk) :    -9981.821931 ->    -9976.146710   1 swap  done
. Log(lk) :    -9976.146710 ->    -9975.159526   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9853.297779 ->    -9851.739111   1 swap  done
. Log(lk) :    -9851.739111 ->    -9851.370871   0 swap  done
. Log(lk) :    -9851.370871 ->    -9851.307705   0 swap  done
. Log(lk) :    -9851.307705 ->    -9851.289972   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9851.116412 ->    -9851.074218   0 swap  done
. Log(lk) :    -9851.074218 ->    -9851.057948   0 swap  done
. Log(lk) :    -9851.057948 ->    -9851.050907   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -9851.070895


. Last optimization step...

. Log(lk) :               * ->    -9851.054689 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9851.054689 ->    -9851.037343 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9851.037343 ->    -9851.035064 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9851.035064 ->    -9851.034945 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9851.034945 ->    -9851.034738 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9851.034738 ->    -9851.034681 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9851.034681 ->    -9851.034681 

. Optimisation of the gamma shape parameter...
nr_d_L:  904
nr_d_lk: 400
nr_loc:  100
nr_glb:  4


. Time used 0h1m11s

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70.18user 0.00system 1:10.92elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps