Sequence filename : /auto/dufayard/res/parc_wim/proteic_M1508_22x431_2003.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... N_RGRFT: 8 N_GLOBL: 4 MAX_DIST: 4 . Log(lk) : * -> -3242.627351 . Log(lk) : -3242.627351 -> -3224.206656 4 swaps done . Log(lk) : -3224.206656 -> -3221.593585 3 swaps done . Log(lk) : -3221.593585 -> -3221.839961 3 swaps done . Moving backward (topology + branch lengths) . Optimisation of the gamma shape parameter... . Log(lk) : -3221.593585 -> -3156.445249 3 swaps done . Log(lk) : -3156.445249 -> -3155.633901 1 swap done . Log(lk) : -3155.633901 -> -3155.367677 0 swap done . Log(lk) : -3155.367677 -> -3155.264330 0 swap done . Log(lk) : -3155.264330 -> -3155.230062 0 swap done . Log(lk) : -3155.230062 -> -3155.217167 0 swap done . Log(lk) : -3155.217167 -> -3155.212037 0 swap done . Log(lk) : -3155.212037 -> -3155.209935 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods -performing local edge length optimizations -performing global edge length optimization Log (lk): -3155.210267 . Last optimization step... . Log(lk) : * -> -3155.210267 . Optimisation of the gamma shape parameter... . Log(lk) : -3155.210267 -> -3155.175616 . Optimisation of the gamma shape parameter... . Log(lk) : -3155.175616 -> -3155.175054 . Optimisation of the gamma shape parameter... . Log(lk) : -3155.175054 -> -3155.175054 . Optimisation of the gamma shape parameter... nr_d_L: 816 nr_d_lk: 384 nr_loc: 100 nr_glb: 4 . Time used 0h0m41s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 34.24user 0.00system 0:40.76elapsed 83%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps