Sequence filename : 		 /auto/dufayard/res/parc_wim/proteic_M1601_36x340_2003.phy
Data type :             	 aa
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 WAG
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 13  N_GLOBL: 6  MAX_DIST: 6


. Log(lk) :               * ->    -7030.012776 
. Log(lk) :    -7030.012776 ->    -6961.461712   6 swaps done 
. Log(lk) :    -6961.461712 ->    -6946.911648   3 swaps done 
. Log(lk) :    -6946.911648 ->    -6941.281571   3 swaps done 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -6930.201089 ->    -6926.427268   4 swaps done 
. Log(lk) :    -6926.427268 ->    -6924.010217   3 swaps done 
. Log(lk) :    -6924.010217 ->    -6922.799519   2 swaps done 
. Log(lk) :    -6922.799519 ->    -6922.610335   1 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -6922.512575 ->    -6922.385751   2 swaps done 
. Log(lk) :    -6922.385751 ->    -6922.379418   1 swap  done
. Log(lk) :    -6922.379418 ->    -6922.309115   1 swap  done
. Log(lk) :    -6922.309115 ->    -6922.351149   1 swap  done

. Moving backward (topology + branch lengths) 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -6922.309115 ->    -6922.200747   1 swap  done
. Log(lk) :    -6922.200747 ->    -6922.131741   0 swap  done
. Log(lk) :    -6922.131741 ->    -6922.119222   0 swap  done
. Log(lk) :    -6922.119222 ->    -6922.113841   0 swap  done
. Log(lk) :    -6922.113841 ->    -6922.110952   0 swap  done
. Log(lk) :    -6922.110952 ->    -6922.109319   0 swap  done
. Log(lk) :    -6922.109319 ->    -6922.108382   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  making move: 44 -> 53 (2.706675)
Log (lk): -6916.985863

. Log(lk) :    -6916.985863 ->    -6916.953348   1 swap  done
. Log(lk) :    -6916.953348 ->    -6916.946516   0 swap  done
. Log(lk) :    -6916.946516 ->    -6916.943871   0 swap  done
. Log(lk) :    -6916.943871 ->    -6916.942559   0 swap  done
. Log(lk) :    -6916.942559 ->    -6916.941848   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  making move: 59 -> 5 (1.913238)
Log (lk): -6915.087713

. Log(lk) :    -6915.087713 ->    -6915.028883   0 swap  done
. Log(lk) :    -6915.028883 ->    -6915.013535   0 swap  done
. Log(lk) :    -6915.013535 ->    -6915.005640   0 swap  done
. Log(lk) :    -6915.005640 ->    -6915.001293   0 swap  done
. Log(lk) :    -6915.001293 ->    -6914.998863   0 swap  done
. Log(lk) :    -6914.998863 ->    -6914.997497   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -6914.998135


. Last optimization step...

. Log(lk) :               * ->    -6914.998026 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -6914.998026 ->    -6914.954849 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -6914.954849 ->    -6914.954118 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -6914.954118 ->    -6914.954045 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -6914.954045 ->    -6914.954045 

. Optimisation of the gamma shape parameter...
nr_d_L:  7108
nr_d_lk: 3173
nr_loc:  151
nr_glb:  6


. Time used 0h4m41s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

237.57user 0.00system 4:40.39elapsed 84%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps