Sequence filename : /auto/dufayard/res/parc_wim/proteic_M1768_31x228_2004.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... N_RGRFT: 11 N_GLOBL: 5 MAX_DIST: 5 . Log(lk) : * -> -1055.645729 . Log(lk) : -1055.645729 -> -1054.666079 7 swaps done . Log(lk) : -1054.666079 -> -1054.478776 5 swaps done . Log(lk) : -1054.478776 -> -1054.413938 2 swaps done . Optimisation of the gamma shape parameter... . Log(lk) : -1053.767113 -> -1053.727910 2 swaps done . Log(lk) : -1053.727910 -> -1053.713760 0 swap done . Log(lk) : -1053.713760 -> -1053.707777 1 swap done . Log(lk) : -1053.707777 -> -1053.703924 2 swaps done . Optimisation of the gamma shape parameter... . Log(lk) : -1053.703738 -> -1053.700214 1 swap done . Log(lk) : -1053.700214 -> -1053.698156 0 swap done . Log(lk) : -1053.698156 -> -1053.697568 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods -performing local edge length optimizations -performing global edge length optimization making move: 15 -> 34 (0.000194) Log (lk): -1053.697343 . Log(lk) : -1053.697343 -> -1053.697321 3 swaps done Trying SPR moves -calculating tree distances and estimating likelihoods -performing local edge length optimizations -performing global edge length optimization Log (lk): -1053.697321 nr_d_L: 2856 nr_d_lk: 1569 nr_loc: 200 nr_glb: 6 . Time used 0h0m29s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 28.72user 0.00system 0:29.60elapsed 97%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps