Sequence filename : /auto/dufayard/res/parc_wim/proteic_M1812_34x176_2004.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Large distance encountered between tax24 and tax5 sequences . Building BIONJ tree... N_RGRFT: 13 N_GLOBL: 6 MAX_DIST: 6 . Large distance encountered between tax24 and tax5 sequences . Log(lk) : * -> -5442.974722 . Log(lk) : -5442.974722 -> -5427.256717 2 swaps done . Log(lk) : -5427.256717 -> -5423.823674 1 swap done . Log(lk) : -5423.823674 -> -5422.478614 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -5421.237569 -> -5420.985238 0 swap done . Log(lk) : -5420.985238 -> -5420.922481 0 swap done . Log(lk) : -5420.922481 -> -5420.902882 0 swap done . Log(lk) : -5420.902882 -> -5420.896077 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -5420.895485 -> -5420.892963 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods -performing local edge length optimizations making move: 27 -> 19 (0.266184) Log (lk): -5420.562870 . Log(lk) : -5420.562870 -> -5420.551738 0 swap done . Log(lk) : -5420.551738 -> -5420.550679 0 swap done . Log(lk) : -5420.550679 -> -5420.550407 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods -performing local edge length optimizations -performing global edge length optimization Log (lk): -5420.552995 nr_d_L: 4256 nr_d_lk: 2003 nr_loc: 102 nr_glb: 6 . Time used 0h1m3s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 59.30user 0.00system 1:03.51elapsed 93%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps