Sequence filename : /auto/dufayard/res/parc_wim/proteic_M1882_8x705_2004.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... N_RGRFT: 2 N_GLOBL: 1 MAX_DIST: 1 . Log(lk) : * -> -6216.317945 . Log(lk) : -6216.317945 -> -6209.768224 0 swap done . Log(lk) : -6209.768224 -> -6209.523947 0 swap done . Log(lk) : -6209.523947 -> -6209.473130 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -6199.555881 -> -6197.164163 0 swap done . Log(lk) : -6197.164163 -> -6196.557822 1 swap done . Log(lk) : -6196.557822 -> -6193.936139 0 swap done . Log(lk) : -6193.936139 -> -6193.593046 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -6192.719101 -> -6192.305063 0 swap done . Log(lk) : -6192.305063 -> -6192.205265 0 swap done . Log(lk) : -6192.205265 -> -6192.178076 0 swap done . Log(lk) : -6192.178076 -> -6192.170070 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods -performing local edge length optimizations -performing global edge length optimization Log (lk): -6192.210132 . Last optimization step... . Log(lk) : * -> -6192.167400 . Optimisation of the gamma shape parameter... . Log(lk) : -6192.167400 -> -6192.049607 . Optimisation of the gamma shape parameter... . Log(lk) : -6192.049607 -> -6192.004633 . Optimisation of the gamma shape parameter... . Log(lk) : -6192.004633 -> -6191.992854 . Optimisation of the gamma shape parameter... . Log(lk) : -6191.992854 -> -6191.987997 . Optimisation of the gamma shape parameter... . Log(lk) : -6191.987997 -> -6191.987997 . Optimisation of the gamma shape parameter... nr_d_L: 40 nr_d_lk: 30 nr_loc: 30 nr_glb: 1 . Time used 0h0m25s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 24.52user 0.00system 0:25.63elapsed 95%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps