Sequence filename : 		 /auto/dufayard/res/parc_wim/proteic_M1989_18x173_2004.phy
Data type :             	 aa
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 WAG
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. 7 sites are made from completely undetermined states ('X', '-', '?')...

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 6  N_GLOBL: 3  MAX_DIST: 3


. Log(lk) :               * ->    -3220.419160 
. Log(lk) :    -3220.419160 ->    -3203.920240   3 swaps done 
. Log(lk) :    -3203.920240 ->    -3201.338300   1 swap  done
. Log(lk) :    -3201.338300 ->    -3200.063036   1 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -3180.497284 ->    -3179.965169   0 swap  done
. Log(lk) :    -3179.965169 ->    -3179.928076   0 swap  done
. Log(lk) :    -3179.928076 ->    -3179.921537   0 swap  done
. Log(lk) :    -3179.921537 ->    -3179.919800   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -3179.916680 ->    -3179.915960   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -3179.915668
nr_d_L:  392
nr_d_lk: 242
nr_loc:  100
nr_glb:  3


. Time used 0h0m22s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

18.84user 0.00system 0:22.40elapsed 84%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps