Sequence filename : 		 /auto/dufayard/res/parc_wim/proteic_M1990_35x153_2004.phy
Data type :             	 aa
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 WAG
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. 5 sites are made from completely undetermined states ('X', '-', '?')...

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 13  N_GLOBL: 6  MAX_DIST: 6


. Log(lk) :               * ->    -1490.525150 
. Log(lk) :    -1490.525150 ->    -1478.226199   3 swaps done 
. Log(lk) :    -1478.226199 ->    -1476.385882   1 swap  done
. Log(lk) :    -1476.385882 ->    -1476.051284   1 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -1458.429390 ->    -1455.750764   0 swap  done
. Log(lk) :    -1455.750764 ->    -1455.468414   0 swap  done
. Log(lk) :    -1455.468414 ->    -1455.302003   0 swap  done
. Log(lk) :    -1455.302003 ->    -1455.201486   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -1454.935011 ->    -1454.825844   1 swap  done
. Log(lk) :    -1454.825844 ->    -1454.800459   0 swap  done
. Log(lk) :    -1454.800459 ->    -1454.789926   0 swap  done
. Log(lk) :    -1454.789926 ->    -1454.784821   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -1454.772646 ->    -1454.767154   0 swap  done
. Log(lk) :    -1454.767154 ->    -1454.765489   0 swap  done
. Log(lk) :    -1454.765489 ->    -1454.764486   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
  making move: 53 -> 54 (0.001494)
Log (lk): -1454.761668

. Log(lk) :    -1454.761668 ->    -1454.760765   1 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
  making move: 53 -> 54 (0.001086)
Log (lk): -1454.758069


. Optimisation of the gamma shape parameter...

. Log(lk) :    -1454.757239 ->    -1454.756176   1 swap  done
. Log(lk) :    -1454.756176 ->    -1454.755816   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -1454.755787
nr_d_L:  6648
nr_d_lk: 3081
nr_loc:  300
nr_glb:  10


. Time used 0h1m35s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

83.02user 0.00system 1:34.36elapsed 87%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps