Sequence filename : /auto/dufayard/res/parc_wim/proteic_M1991_32x129_2004.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . 9 sites are made from completely undetermined states ('X', '-', '?')... . Compressing sequences... . Computing pairwise distances... . Large distance encountered between tax2 and tax1 sequences . Large distance encountered between tax3 and tax1 sequences . Large distance encountered between tax4 and tax1 sequences . Large distance encountered between tax5 and tax1 sequences . Large distance encountered between tax6 and tax1 sequences . Large distance encountered between tax7 and tax1 sequences . Large distance encountered between tax8 and tax1 sequences . Large distance encountered between tax9 and tax1 sequences . Large distance encountered between tax10 and tax1 sequences . Large distance encountered between tax11 and tax1 sequences . Large distance encountered between tax12 and tax1 sequences . Large distance encountered between tax13 and tax1 sequences . Large distance encountered between tax14 and tax1 sequences . Large distance encountered between tax15 and tax1 sequences . Large distance encountered between tax16 and tax1 sequences . Large distance encountered between tax17 and tax1 sequences . Large distance encountered between tax18 and tax1 sequences . Large distance encountered between tax19 and tax1 sequences . Large distance encountered between tax20 and tax1 sequences . Large distance encountered between tax21 and tax1 sequences . Large distance encountered between tax22 and tax1 sequences . Large distance encountered between tax23 and tax1 sequences . Large distance encountered between tax24 and tax1 sequences . Large distance encountered between tax25 and tax1 sequences . Large distance encountered between tax26 and tax1 sequences . Large distance encountered between tax27 and tax1 sequences . Large distance encountered between tax28 and tax1 sequences . Large distance encountered between tax29 and tax1 sequences . Large distance encountered between tax30 and tax1 sequences . Large distance encountered between tax31 and tax1 sequences . Large distance encountered between tax32 and tax1 sequences . Large distance encountered between tax3 and tax2 sequences . Large distance encountered between tax4 and tax2 sequences . Large distance encountered between tax5 and tax2 sequences . Large distance encountered between tax6 and tax2 sequences . Large distance encountered between tax7 and tax2 sequences . Large distance encountered between tax8 and tax2 sequences . Large distance encountered between tax9 and tax2 sequences . Large distance encountered between tax10 and tax2 sequences . Large distance encountered between tax11 and tax2 sequences . Large distance encountered between tax12 and tax2 sequences . Large distance encountered between tax13 and tax2 sequences . Large distance encountered between tax14 and tax2 sequences . Large distance encountered between tax15 and tax3 sequences . Large distance encountered between tax16 and tax3 sequences . Large distance encountered between tax17 and tax3 sequences . Large distance encountered between tax18 and tax3 sequences . Large distance encountered between tax19 and tax3 sequences . Large distance encountered between tax20 and tax3 sequences . Large distance encountered between tax21 and tax3 sequences . Large distance encountered between tax22 and tax3 sequences . Large distance encountered between tax24 and tax3 sequences . Large distance encountered between tax25 and tax3 sequences . Large distance encountered between tax26 and tax3 sequences . Large distance encountered between tax27 and tax3 sequences . Large distance encountered between tax28 and tax3 sequences . Large distance encountered between tax29 and tax3 sequences . Large distance encountered between tax30 and tax3 sequences . Large distance encountered between tax31 and tax3 sequences . Large distance encountered between tax32 and tax3 sequences . Large distance encountered between tax15 and tax4 sequences . Large distance encountered between tax16 and tax4 sequences . Large distance encountered between tax17 and tax4 sequences . Large distance encountered between tax18 and tax4 sequences . Large distance encountered between tax19 and tax4 sequences . Large distance encountered between tax20 and tax4 sequences . Large distance encountered between tax21 and tax4 sequences . Large distance encountered between tax22 and tax4 sequences . Large distance encountered between tax24 and tax4 sequences . Large distance encountered between tax25 and tax4 sequences . Large distance encountered between tax26 and tax4 sequences . Large distance encountered between tax27 and tax4 sequences . Large distance encountered between tax28 and tax4 sequences . Large distance encountered between tax29 and tax4 sequences . Large distance encountered between tax30 and tax4 sequences . Large distance encountered between tax31 and tax4 sequences . Large distance encountered between tax32 and tax4 sequences . Large distance encountered between tax15 and tax5 sequences . Large distance encountered between tax16 and tax5 sequences . Large distance encountered between tax17 and tax5 sequences . Large distance encountered between tax18 and tax5 sequences . Large distance encountered between tax19 and tax5 sequences . Large distance encountered between tax20 and tax5 sequences . Large distance encountered between tax21 and tax5 sequences . Large distance encountered between tax22 and tax5 sequences . Large distance encountered between tax24 and tax5 sequences . Large distance encountered between tax25 and tax5 sequences . Large distance encountered between tax26 and tax5 sequences . Large distance encountered between tax27 and tax5 sequences . Large distance encountered between tax28 and tax5 sequences . Large distance encountered between tax29 and tax5 sequences . Large distance encountered between tax30 and tax5 sequences . Large distance encountered between tax31 and tax5 sequences . Large distance encountered between tax32 and tax5 sequences . Large distance encountered between tax15 and tax6 sequences . Large distance encountered between tax16 and tax6 sequences . Large distance encountered between tax17 and tax6 sequences . Large distance encountered between tax18 and tax6 sequences . Large distance encountered between tax19 and tax6 sequences . Large distance encountered between tax20 and tax6 sequences . Large distance encountered between tax21 and tax6 sequences . Large distance encountered between tax22 and tax6 sequences . Large distance encountered between tax24 and tax6 sequences . Large distance encountered between tax25 and tax6 sequences . Large distance encountered between tax26 and tax6 sequences . Large distance encountered between tax27 and tax6 sequences . Large distance encountered between tax28 and tax6 sequences . Large distance encountered between tax29 and tax6 sequences . Large distance encountered between tax30 and tax6 sequences . Large distance encountered between tax31 and tax6 sequences . Large distance encountered between tax32 and tax6 sequences . Large distance encountered between tax15 and tax7 sequences . Large distance encountered between tax16 and tax7 sequences . Large distance encountered between tax17 and tax7 sequences . Large distance encountered between tax18 and tax7 sequences . Large distance encountered between tax19 and tax7 sequences . Large distance encountered between tax20 and tax7 sequences . Large distance encountered between tax21 and tax7 sequences . Large distance encountered between tax22 and tax7 sequences . Large distance encountered between tax24 and tax7 sequences . Large distance encountered between tax25 and tax7 sequences . Large distance encountered between tax26 and tax7 sequences . Large distance encountered between tax27 and tax7 sequences . Large distance encountered between tax28 and tax7 sequences . Large distance encountered between tax29 and tax7 sequences . Large distance encountered between tax30 and tax7 sequences . Large distance encountered between tax31 and tax7 sequences . Large distance encountered between tax32 and tax7 sequences . Large distance encountered between tax16 and tax8 sequences . Large distance encountered between tax18 and tax8 sequences . Large distance encountered between tax20 and tax8 sequences . Large distance encountered between tax21 and tax8 sequences . Large distance encountered between tax22 and tax8 sequences . Large distance encountered between tax25 and tax8 sequences . Large distance encountered between tax26 and tax8 sequences . Large distance encountered between tax28 and tax8 sequences . Large distance encountered between tax29 and tax8 sequences . Large distance encountered between tax30 and tax8 sequences . Large distance encountered between tax31 and tax8 sequences . Large distance encountered between tax32 and tax8 sequences . Large distance encountered between tax16 and tax9 sequences . Large distance encountered between tax17 and tax9 sequences . Large distance encountered between tax18 and tax9 sequences . Large distance encountered between tax20 and tax9 sequences . Large distance encountered between tax21 and tax9 sequences . Large distance encountered between tax22 and tax9 sequences . Large distance encountered between tax24 and tax9 sequences . Large distance encountered between tax25 and tax9 sequences . Large distance encountered between tax28 and tax9 sequences . Large distance encountered between tax29 and tax9 sequences . Large distance encountered between tax30 and tax9 sequences . Large distance encountered between tax31 and tax9 sequences . Large distance encountered between tax32 and tax9 sequences . Large distance encountered between tax15 and tax10 sequences . Large distance encountered between tax16 and tax10 sequences . Large distance encountered between tax17 and tax10 sequences . Large distance encountered between tax18 and tax10 sequences . Large distance encountered between tax19 and tax10 sequences . Large distance encountered between tax20 and tax10 sequences . Large distance encountered between tax21 and tax10 sequences . Large distance encountered between tax22 and tax10 sequences . Large distance encountered between tax24 and tax10 sequences . Large distance encountered between tax25 and tax10 sequences . Large distance encountered between tax26 and tax10 sequences . Large distance encountered between tax27 and tax10 sequences . Large distance encountered between tax28 and tax10 sequences . Large distance encountered between tax29 and tax10 sequences . Large distance encountered between tax30 and tax10 sequences . Large distance encountered between tax31 and tax10 sequences . Large distance encountered between tax32 and tax10 sequences . Large distance encountered between tax16 and tax11 sequences . Large distance encountered between tax18 and tax11 sequences . Large distance encountered between tax20 and tax11 sequences . Large distance encountered between tax21 and tax11 sequences . Large distance encountered between tax28 and tax11 sequences . Large distance encountered between tax29 and tax11 sequences . Large distance encountered between tax30 and tax11 sequences . Large distance encountered between tax31 and tax11 sequences . Large distance encountered between tax32 and tax11 sequences . Large distance encountered between tax15 and tax12 sequences . Large distance encountered between tax16 and tax12 sequences . Large distance encountered between tax18 and tax12 sequences . Large distance encountered between tax20 and tax12 sequences . Large distance encountered between tax21 and tax12 sequences . Large distance encountered between tax22 and tax12 sequences . Large distance encountered between tax24 and tax12 sequences . Large distance encountered between tax25 and tax12 sequences . Large distance encountered between tax26 and tax12 sequences . Large distance encountered between tax27 and tax12 sequences . Large distance encountered between tax28 and tax12 sequences . Large distance encountered between tax29 and tax12 sequences . Large distance encountered between tax30 and tax12 sequences . Large distance encountered between tax31 and tax12 sequences . Large distance encountered between tax32 and tax12 sequences . Large distance encountered between tax15 and tax13 sequences . Large distance encountered between tax16 and tax13 sequences . Large distance encountered between tax17 and tax13 sequences . Large distance encountered between tax18 and tax13 sequences . Large distance encountered between tax19 and tax13 sequences . Large distance encountered between tax20 and tax13 sequences . Large distance encountered between tax21 and tax13 sequences . Large distance encountered between tax22 and tax13 sequences . Large distance encountered between tax24 and tax13 sequences . Large distance encountered between tax25 and tax13 sequences . Large distance encountered between tax26 and tax13 sequences . Large distance encountered between tax27 and tax13 sequences . Large distance encountered between tax28 and tax13 sequences . Large distance encountered between tax29 and tax13 sequences . Large distance encountered between tax30 and tax13 sequences . Large distance encountered between tax31 and tax13 sequences . Large distance encountered between tax32 and tax13 sequences . Large distance encountered between tax16 and tax14 sequences . Large distance encountered between tax18 and tax14 sequences . Large distance encountered between tax20 and tax14 sequences . Large distance encountered between tax21 and tax14 sequences . Large distance encountered between tax25 and tax14 sequences . Large distance encountered between tax28 and tax14 sequences . Large distance encountered between tax29 and tax14 sequences . Large distance encountered between tax30 and tax14 sequences . Large distance encountered between tax31 and tax14 sequences . Large distance encountered between tax32 and tax14 sequences . Building BIONJ tree... N_RGRFT: 12 N_GLOBL: 6 MAX_DIST: 6 . Large distance encountered between tax2 and tax1 sequences . Large distance encountered between tax3 and tax1 sequences . Large distance encountered between tax4 and tax1 sequences . Large distance encountered between tax5 and tax1 sequences . Large distance encountered between tax6 and tax1 sequences . Large distance encountered between tax7 and tax1 sequences . Large distance encountered between tax8 and tax1 sequences . Large distance encountered between tax9 and tax1 sequences . Large distance encountered between tax10 and tax1 sequences . Large distance encountered between tax11 and tax1 sequences . Large distance encountered between tax12 and tax1 sequences . Large distance encountered between tax13 and tax1 sequences . Large distance encountered between tax14 and tax1 sequences . Large distance encountered between tax15 and tax1 sequences . Large distance encountered between tax16 and tax1 sequences . Large distance encountered between tax17 and tax1 sequences . Large distance encountered between tax18 and tax1 sequences . Large distance encountered between tax19 and tax1 sequences . Large distance encountered between tax20 and tax1 sequences . Large distance encountered between tax21 and tax1 sequences . Large distance encountered between tax22 and tax1 sequences . Large distance encountered between tax23 and tax1 sequences . Large distance encountered between tax24 and tax1 sequences . Large distance encountered between tax25 and tax1 sequences . Large distance encountered between tax26 and tax1 sequences . Large distance encountered between tax27 and tax1 sequences . Large distance encountered between tax28 and tax1 sequences . Large distance encountered between tax29 and tax1 sequences . Large distance encountered between tax30 and tax1 sequences . Large distance encountered between tax31 and tax1 sequences . Large distance encountered between tax32 and tax1 sequences . Large distance encountered between tax3 and tax2 sequences . Large distance encountered between tax4 and tax2 sequences . Large distance encountered between tax5 and tax2 sequences . Large distance encountered between tax6 and tax2 sequences . Large distance encountered between tax7 and tax2 sequences . Large distance encountered between tax8 and tax2 sequences . Large distance encountered between tax9 and tax2 sequences . Large distance encountered between tax10 and tax2 sequences . Large distance encountered between tax11 and tax2 sequences . Large distance encountered between tax12 and tax2 sequences . Large distance encountered between tax13 and tax2 sequences . Large distance encountered between tax14 and tax2 sequences . Large distance encountered between tax15 and tax3 sequences . Large distance encountered between tax16 and tax3 sequences . Large distance encountered between tax17 and tax3 sequences . Large distance encountered between tax18 and tax3 sequences . Large distance encountered between tax19 and tax3 sequences . Large distance encountered between tax20 and tax3 sequences . Large distance encountered between tax21 and tax3 sequences . Large distance encountered between tax22 and tax3 sequences . Large distance encountered between tax24 and tax3 sequences . Large distance encountered between tax25 and tax3 sequences . Large distance encountered between tax26 and tax3 sequences . Large distance encountered between tax27 and tax3 sequences . Large distance encountered between tax28 and tax3 sequences . Large distance encountered between tax29 and tax3 sequences . Large distance encountered between tax30 and tax3 sequences . Large distance encountered between tax31 and tax3 sequences . Large distance encountered between tax32 and tax3 sequences . Large distance encountered between tax15 and tax4 sequences . Large distance encountered between tax16 and tax4 sequences . Large distance encountered between tax17 and tax4 sequences . Large distance encountered between tax18 and tax4 sequences . Large distance encountered between tax19 and tax4 sequences . Large distance encountered between tax20 and tax4 sequences . Large distance encountered between tax21 and tax4 sequences . Large distance encountered between tax22 and tax4 sequences . Large distance encountered between tax24 and tax4 sequences . Large distance encountered between tax25 and tax4 sequences . Large distance encountered between tax26 and tax4 sequences . Large distance encountered between tax27 and tax4 sequences . Large distance encountered between tax28 and tax4 sequences . Large distance encountered between tax29 and tax4 sequences . Large distance encountered between tax30 and tax4 sequences . Large distance encountered between tax31 and tax4 sequences . Large distance encountered between tax32 and tax4 sequences . Large distance encountered between tax15 and tax5 sequences . Large distance encountered between tax16 and tax5 sequences . Large distance encountered between tax17 and tax5 sequences . Large distance encountered between tax18 and tax5 sequences . Large distance encountered between tax19 and tax5 sequences . Large distance encountered between tax20 and tax5 sequences . Large distance encountered between tax21 and tax5 sequences . Large distance encountered between tax22 and tax5 sequences . Large distance encountered between tax24 and tax5 sequences . Large distance encountered between tax25 and tax5 sequences . Large distance encountered between tax26 and tax5 sequences . Large distance encountered between tax27 and tax5 sequences . Large distance encountered between tax28 and tax5 sequences . Large distance encountered between tax29 and tax5 sequences . Large distance encountered between tax30 and tax5 sequences . Large distance encountered between tax31 and tax5 sequences . Large distance encountered between tax32 and tax5 sequences . Large distance encountered between tax15 and tax6 sequences . Large distance encountered between tax16 and tax6 sequences . Large distance encountered between tax17 and tax6 sequences . Large distance encountered between tax18 and tax6 sequences . Large distance encountered between tax19 and tax6 sequences . Large distance encountered between tax20 and tax6 sequences . Large distance encountered between tax21 and tax6 sequences . Large distance encountered between tax22 and tax6 sequences . Large distance encountered between tax24 and tax6 sequences . Large distance encountered between tax25 and tax6 sequences . Large distance encountered between tax26 and tax6 sequences . Large distance encountered between tax27 and tax6 sequences . Large distance encountered between tax28 and tax6 sequences . Large distance encountered between tax29 and tax6 sequences . Large distance encountered between tax30 and tax6 sequences . Large distance encountered between tax31 and tax6 sequences . Large distance encountered between tax32 and tax6 sequences . Large distance encountered between tax15 and tax7 sequences . Large distance encountered between tax16 and tax7 sequences . Large distance encountered between tax17 and tax7 sequences . Large distance encountered between tax18 and tax7 sequences . Large distance encountered between tax19 and tax7 sequences . Large distance encountered between tax20 and tax7 sequences . Large distance encountered between tax21 and tax7 sequences . Large distance encountered between tax22 and tax7 sequences . Large distance encountered between tax24 and tax7 sequences . Large distance encountered between tax25 and tax7 sequences . Large distance encountered between tax26 and tax7 sequences . Large distance encountered between tax27 and tax7 sequences . Large distance encountered between tax28 and tax7 sequences . Large distance encountered between tax29 and tax7 sequences . Large distance encountered between tax30 and tax7 sequences . Large distance encountered between tax31 and tax7 sequences . Large distance encountered between tax32 and tax7 sequences . Large distance encountered between tax16 and tax8 sequences . Large distance encountered between tax18 and tax8 sequences . Large distance encountered between tax20 and tax8 sequences . Large distance encountered between tax21 and tax8 sequences . Large distance encountered between tax22 and tax8 sequences . Large distance encountered between tax25 and tax8 sequences . Large distance encountered between tax26 and tax8 sequences . Large distance encountered between tax28 and tax8 sequences . Large distance encountered between tax29 and tax8 sequences . Large distance encountered between tax30 and tax8 sequences . Large distance encountered between tax31 and tax8 sequences . Large distance encountered between tax32 and tax8 sequences . Large distance encountered between tax16 and tax9 sequences . Large distance encountered between tax17 and tax9 sequences . Large distance encountered between tax18 and tax9 sequences . Large distance encountered between tax20 and tax9 sequences . Large distance encountered between tax21 and tax9 sequences . Large distance encountered between tax22 and tax9 sequences . Large distance encountered between tax24 and tax9 sequences . Large distance encountered between tax25 and tax9 sequences . Large distance encountered between tax28 and tax9 sequences . Large distance encountered between tax29 and tax9 sequences . Large distance encountered between tax30 and tax9 sequences . Large distance encountered between tax31 and tax9 sequences . Large distance encountered between tax32 and tax9 sequences . Large distance encountered between tax15 and tax10 sequences . Large distance encountered between tax16 and tax10 sequences . Large distance encountered between tax17 and tax10 sequences . Large distance encountered between tax18 and tax10 sequences . Large distance encountered between tax19 and tax10 sequences . Large distance encountered between tax20 and tax10 sequences . Large distance encountered between tax21 and tax10 sequences . Large distance encountered between tax22 and tax10 sequences . Large distance encountered between tax24 and tax10 sequences . Large distance encountered between tax25 and tax10 sequences . Large distance encountered between tax26 and tax10 sequences . Large distance encountered between tax27 and tax10 sequences . Large distance encountered between tax28 and tax10 sequences . Large distance encountered between tax29 and tax10 sequences . Large distance encountered between tax30 and tax10 sequences . Large distance encountered between tax31 and tax10 sequences . Large distance encountered between tax32 and tax10 sequences . Large distance encountered between tax16 and tax11 sequences . Large distance encountered between tax18 and tax11 sequences . Large distance encountered between tax20 and tax11 sequences . Large distance encountered between tax21 and tax11 sequences . Large distance encountered between tax28 and tax11 sequences . Large distance encountered between tax29 and tax11 sequences . Large distance encountered between tax30 and tax11 sequences . Large distance encountered between tax31 and tax11 sequences . Large distance encountered between tax32 and tax11 sequences . Large distance encountered between tax15 and tax12 sequences . Large distance encountered between tax16 and tax12 sequences . Large distance encountered between tax18 and tax12 sequences . Large distance encountered between tax20 and tax12 sequences . Large distance encountered between tax21 and tax12 sequences . Large distance encountered between tax22 and tax12 sequences . Large distance encountered between tax24 and tax12 sequences . Large distance encountered between tax25 and tax12 sequences . Large distance encountered between tax26 and tax12 sequences . Large distance encountered between tax27 and tax12 sequences . Large distance encountered between tax28 and tax12 sequences . Large distance encountered between tax29 and tax12 sequences . Large distance encountered between tax30 and tax12 sequences . Large distance encountered between tax31 and tax12 sequences . Large distance encountered between tax32 and tax12 sequences . Large distance encountered between tax15 and tax13 sequences . Large distance encountered between tax16 and tax13 sequences . Large distance encountered between tax17 and tax13 sequences . Large distance encountered between tax18 and tax13 sequences . Large distance encountered between tax19 and tax13 sequences . Large distance encountered between tax20 and tax13 sequences . Large distance encountered between tax21 and tax13 sequences . Large distance encountered between tax22 and tax13 sequences . Large distance encountered between tax24 and tax13 sequences . Large distance encountered between tax25 and tax13 sequences . Large distance encountered between tax26 and tax13 sequences . Large distance encountered between tax27 and tax13 sequences . Large distance encountered between tax28 and tax13 sequences . Large distance encountered between tax29 and tax13 sequences . Large distance encountered between tax30 and tax13 sequences . Large distance encountered between tax31 and tax13 sequences . Large distance encountered between tax32 and tax13 sequences . Large distance encountered between tax16 and tax14 sequences . Large distance encountered between tax18 and tax14 sequences . Large distance encountered between tax20 and tax14 sequences . Large distance encountered between tax21 and tax14 sequences . Large distance encountered between tax25 and tax14 sequences . Large distance encountered between tax28 and tax14 sequences . Large distance encountered between tax29 and tax14 sequences . Large distance encountered between tax30 and tax14 sequences . Large distance encountered between tax31 and tax14 sequences . Large distance encountered between tax32 and tax14 sequences . Log(lk) : * -> -2491.806807 . Log(lk) : -2491.806807 -> -2411.966775 6 swaps done . Log(lk) : -2411.966775 -> -2400.800954 2 swaps done . Log(lk) : -2400.800954 -> -2398.726167 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -2396.440577 -> -2396.019513 0 swap done . Log(lk) : -2396.019513 -> -2395.893427 0 swap done . Log(lk) : -2395.893427 -> -2395.843748 0 swap done . Log(lk) : -2395.843748 -> -2395.820027 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -2395.819511 -> -2395.806910 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods making move: 1 -> 43 (0.044034) making move: 19 -> 11 (0.091546) making move: 19 -> 35 (3.261144) making move: 35 -> 26 (0.533369) Log (lk): -2388.731495 . Log(lk) : -2388.731495 -> -2387.297070 3 swaps done . Log(lk) : -2387.297070 -> -2385.565731 1 swap done . Log(lk) : -2385.565731 -> -2385.237577 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -2385.235482 -> -2385.160187 0 swap done . Log(lk) : -2385.160187 -> -2385.128618 0 swap done . Log(lk) : -2385.128618 -> -2385.109426 0 swap done . Log(lk) : -2385.109426 -> -2385.095677 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -2385.095639 -> -2385.084975 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods -performing local edge length optimizations -performing global edge length optimization making move: 47 -> 59 (0.012576) Log (lk): -2385.059149 . Log(lk) : -2385.059149 -> -2385.052984 1 swap done . Log(lk) : -2385.052984 -> -2385.049349 0 swap done . Log(lk) : -2385.049349 -> -2385.046375 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -2385.046373 -> -2385.043841 0 swap done . Log(lk) : -2385.043841 -> -2385.041680 0 swap done . Log(lk) : -2385.041680 -> -2385.039824 0 swap done . Log(lk) : -2385.039824 -> -2385.038231 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods -performing local edge length optimizations -performing global edge length optimization making move: 47 -> 59 (0.001109) Log (lk): -2385.034633 . Optimisation of the gamma shape parameter... . Log(lk) : -2385.034630 -> -2385.032768 1 swap done . Log(lk) : -2385.032768 -> -2385.032105 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods -performing local edge length optimizations -performing global edge length optimization Log (lk): -2385.029139 nr_d_L: 6408 nr_d_lk: 3663 nr_loc: 300 nr_glb: 8 . Time used 0h1m53s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 99.50user 0.00system 1:53.80elapsed 87%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps