Sequence filename : /auto/dufayard/res/parc_wim/proteic_M2302_24x365_2005.phy Data type : aa Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : WAG Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . 19 sites are made from completely undetermined states ('X', '-', '?')... . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... N_RGRFT: 9 N_GLOBL: 4 MAX_DIST: 4 . Log(lk) : * -> -4215.968812 . Log(lk) : -4215.968812 -> -4209.061826 3 swaps done . Log(lk) : -4209.061826 -> -4207.403683 1 swap done . Log(lk) : -4207.403683 -> -4207.232226 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -4205.031533 -> -4204.918520 0 swap done . Log(lk) : -4204.918520 -> -4204.900226 0 swap done . Log(lk) : -4204.900226 -> -4204.895900 0 swap done . Log(lk) : -4204.895900 -> -4204.894794 0 swap done . Optimisation of the gamma shape parameter... . Log(lk) : -4204.892658 -> -4204.892234 0 swap done Trying SPR moves -calculating tree distances and estimating likelihoods -performing local edge length optimizations -performing global edge length optimization Log (lk): -4204.892234 . Last optimization step... . Log(lk) : * -> -4204.892234 . Optimisation of the gamma shape parameter... . Log(lk) : -4204.892234 -> -4204.892232 . Optimisation of the gamma shape parameter... . Log(lk) : -4204.892232 -> -4204.892232 . Optimisation of the gamma shape parameter... nr_d_L: 776 nr_d_lk: 495 nr_loc: 100 nr_glb: 4 . Time used 0h0m52s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 50.68user 0.00system 0:51.67elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps