Sequence filename : 		 /auto/dufayard/res/parc_wim/proteic_M2382_28x162_2005.phy
Data type :             	 aa
Sequence format : 		 interleaved
Number of data sets : 		 1
Nb of bootstrapped data sets : 	 0
Model name : 			 WAG
Proportion of invariable sites : 0.000000
Number of subst. rate categs : 	 4
Gamma distribution parameter : 	 estimated
Starting tree : 		 BIONJ
Optimise tree topology : 	 yes
Optimise branch lengths and rate parameters : yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

N_RGRFT: 10  N_GLOBL: 5  MAX_DIST: 5


. Log(lk) :               * ->    -2855.519112 
. Log(lk) :    -2855.519112 ->    -2809.102244   4 swaps done 
. Log(lk) :    -2809.102244 ->    -2802.917086   5 swaps done 
. Log(lk) :    -2802.917086 ->    -2802.164652   4 swaps done 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -2719.013857 ->    -2717.312924   5 swaps done 
. Log(lk) :    -2717.312924 ->    -2716.455534   5 swaps done 
. Log(lk) :    -2716.455534 ->    -2714.665372   3 swaps done 
. Log(lk) :    -2714.665372 ->    -2712.371163   2 swaps done 

. Optimisation of the gamma shape parameter...

. Log(lk) :    -2712.341106 ->    -2711.177362   1 swap  done
. Log(lk) :    -2711.177362 ->    -2710.688814   0 swap  done
. Log(lk) :    -2710.688814 ->    -2710.608891   0 swap  done
. Log(lk) :    -2710.608891 ->    -2710.586673   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -2710.586579 ->    -2710.580170   0 swap  done
. Log(lk) :    -2710.580170 ->    -2710.578241   0 swap  done
. Log(lk) :    -2710.578241 ->    -2710.577636   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  making move: 13 -> 19 (0.340191)
Log (lk): -2710.042740

. Log(lk) :    -2710.042740 ->    -2710.032565   0 swap  done

. Optimisation of the gamma shape parameter...

. Log(lk) :    -2710.027150 ->    -2710.025893   0 swap  done
. Log(lk) :    -2710.025893 ->    -2710.025641   0 swap  done
Trying SPR moves
  -calculating tree distances and estimating likelihoods
  -performing local edge length optimizations
  -performing global edge length optimization
Log (lk): -2710.026480
nr_d_L:  2512
nr_d_lk: 1284
nr_loc:  101
nr_glb:  5


. Time used 0h0m51s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

45.11user 0.00system 0:51.60elapsed 87%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps